Variant report

Variant	rs2499550
Chromosome Location	chrX:57309282-57309283
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:38)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:38 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chrX:57309040-57309331	Hela-S3	cervix:	n/a	n/a
2	GATA3	chrX:57309110-57309369	T-47D	breast:	n/a	n/a
3	RAD21	chrX:57309101-57309287	HepG2	liver:	n/a	n/a
4	CTCF	chrX:57309180-57309330	Hela-S3	cervix:	n/a	n/a
5	CTCF	chrX:57308949-57309396	MCF-7	breast:	n/a	n/a
6	CTCF	chrX:57309140-57309290	SAEC	small airway:	n/a	n/a
7	RAD21	chrX:57309035-57309458	MCF-7	breast:	n/a	n/a
8	CTCF	chrX:57309160-57309310	GM12873	blood:	n/a	n/a
9	CTCF	chrX:57309020-57309325	T-47D	breast:	n/a	n/a
10	RAD21	chrX:57308941-57309384	HepG2	liver:	n/a	n/a
11	RAD21	chrX:57308915-57309411	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chrX:57308988-57309348	Hela-S3	cervix:	n/a	n/a
13	MAX	chrX:57309041-57309391	H1-hESC	embryonic stem cell:	n/a	n/a
14	MYC	chrX:57309118-57309369	MCF10A-Er-Src	breast:	n/a	n/a
15	RAD21	chrX:57308921-57309382	A549	lung:	n/a	n/a
16	MAX	chrX:57309028-57309413	MCF-7	breast:	n/a	n/a
17	CTCF	chrX:57309104-57309374	MCF-7	breast:	n/a	n/a
18	MAX	chrX:57309049-57309437	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chrX:57309281-57309379	MCF-7	breast:	n/a	n/a
20	CTCF	chrX:57309124-57309367	HepG2	liver:	n/a	n/a
21	CTCF	chrX:57309140-57309290	MCF-7	breast:	n/a	n/a
22	RAD21	chrX:57308933-57309368	H1-hESC	embryonic stem cell:	n/a	n/a
23	CTCF	chrX:57308981-57309362	GM12878	blood:	n/a	n/a
24	CTCF	chrX:57309005-57309342	K562	blood:	n/a	n/a
25	CTCF	chrX:57309056-57309369	HepG2	liver:	n/a	n/a
26	RAD21	chrX:57309002-57309366	ECC-1	luminal epithelium:	n/a	n/a
27	CTCF	chrX:57309075-57309398	MCF-7	breast:	n/a	n/a
28	CTCF	chrX:57308999-57309400	MCF-7	breast:	n/a	n/a
29	FOS	chrX:57309127-57309316	MCF10A-Er-Src	breast:	n/a	n/a
30	RAD21	chrX:57309007-57309426	H1-hESC	embryonic stem cell:	n/a	n/a
31	RAD21	chrX:57308917-57309482	MCF-7	breast:	n/a	n/a
32	RAD21	chrX:57308887-57309416	HCT-116	colon:	n/a	n/a
33	MYC	chrX:57309019-57309344	MCF10A-Er-Src	breast:	n/a	n/a
34	RAD21	chrX:57309020-57309359	HepG2	liver:	n/a	n/a
35	SMC3	chrX:57309064-57309336	HepG2	liver:	n/a	n/a
36	ZNF143	chrX:57309097-57309302	GM12878	blood:	n/a	n/a
37	RAD21	chrX:57308934-57309401	HCT-116	colon:	n/a	n/a
38	SMC3	chrX:57309091-57309296	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:57182521..57183136-chrX:57308800..57309746,2	MCF-7	breast:
2	chrX:57309045..57309569-chrX:57555198..57555707,2	MCF-7	breast:
3	chrX:57309112..57310846-chrX:57312041..57314170,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAAH2	TF binding region
ENSG00000165591	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1073967	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs10855185	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1113635	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1116848	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1160711	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12393264	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12559310	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12687268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12688558	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12689809	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12689811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1367830	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1431677	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1469592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs150099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1560514	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1583200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1594503	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1594508	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601317	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601318	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs1835692	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1835696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1835698	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2015312	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2060113	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2071722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116364	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116366	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2163537	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2195766	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2213510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2516020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs378487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4030473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4129399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4319228	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4326513	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4557841	0.86[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs4587468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4607761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826349	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826550	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826551	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826553	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs538910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914095	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914097	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914100	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914107	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5914999	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915005	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5915016	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915019	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915027	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5960270	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960969	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5960970	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960980	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6611612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6612757	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612796	0.87[CHB][hapmap]
rs697664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7059676	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs707346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs717848	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7885658	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs957721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs980735	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57308600-57309400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chrX:57308800-57310600	Enhancers	Dnd41	blood
3	chrX:57309000-57309600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chrX:57309200-57309600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chrX:57309200-57309600	Flanking Active TSS	HepG2	liver
6	chrX:57309200-57310000	Enhancers	Primary T cells from cord blood	blood
7	chrX:57309200-57310000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chrX:57309200-57310600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chrX:57309200-57310600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chrX:57309200-57310600	Enhancers	HUES6 Cell Line	embryonic stem cell

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