Variant report

Variant	rs2516020
Chromosome Location	chrX:57310040-57310041
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57309112..57310846-chrX:57312041..57314170,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165591	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1073967	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs10855185	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1113635	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1116848	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1160711	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12393264	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12559310	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12687268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12688558	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12689809	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12689811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1367830	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1431677	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1469592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1560514	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1583200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1594503	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1594508	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601317	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601318	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs1835692	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1835696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1835698	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2015312	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2060113	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2071722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116364	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116366	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2163537	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2195766	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2213510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs378487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4030473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4129399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4319228	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4326513	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4557841	0.86[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs4587468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4607761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826349	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826550	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826551	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826553	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs538910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914095	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914097	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914100	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914107	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914999	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915005	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5915016	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915019	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915027	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5960270	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960969	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5960970	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960980	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6611612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612757	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612796	0.87[CHB][hapmap]
rs697664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7059676	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs707346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs717848	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7885658	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs957721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs980735	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57308800-57310600	Enhancers	Dnd41	blood
2	chrX:57309200-57310600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chrX:57309200-57310600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chrX:57309200-57310600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chrX:57309400-57311600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chrX:57309600-57310400	Active TSS	HepG2	liver
7	chrX:57309600-57311400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chrX:57309600-57311800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chrX:57309800-57310200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chrX:57309800-57312800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chrX:57310000-57310600	Enhancers	Fetal Thymus	thymus
12	chrX:57310000-57313000	Weak transcription	Primary T cells from cord blood	blood
13	chrX:57310000-57313000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chrX:57310000-57313000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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