Variant report

Variant	rs957721
Chromosome Location	chrX:57315411-57315412
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:57312436..57314636-chrX:57314680..57317965,3	MCF-7	breast:
2	chrX:57314728..57316370-chrX:57318588..57320279,2	MCF-7	breast:
3	chrX:57314064..57315645-chrX:57318373..57320098,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165591	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1073967	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs10855185	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1113635	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1116848	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1160711	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12393264	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12559310	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12687268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12688558	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12689809	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12689811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1367830	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1431677	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1469592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1560514	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1583200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1594503	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1594508	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601317	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1601318	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs1835692	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1835696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1835698	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1864695	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1864697	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2015312	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2060113	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2071722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116364	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2116366	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2163537	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2195766	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2213510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2499555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2516023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs378487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4030473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4129399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4319228	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4326513	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4557841	0.86[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs4587468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4607761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826349	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826550	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826551	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826553	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4826568	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs538910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914095	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914097	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914100	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914107	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5914118	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5914897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914999	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915005	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs5915016	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915019	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5915027	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5915052	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960270	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960969	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5960970	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960980	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6611612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611626	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6612757	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612796	0.87[CHB][hapmap]
rs697664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7059676	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs707346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs717848	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7885658	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs980735	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57312800-57318000	Active TSS	Primary T helper cells PMA-I stimulated	--
2	chrX:57313800-57316400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chrX:57314000-57317800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chrX:57314200-57321400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chrX:57314400-57315800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chrX:57314400-57319000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chrX:57314400-57319000	Weak transcription	Fetal Intestine Large	intestine
8	chrX:57314400-57319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chrX:57314400-57321400	Weak transcription	Pancreas	Pancrea
10	chrX:57314400-57322400	Weak transcription	Duodenum Mucosa	Duodenum
11	chrX:57314600-57315600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chrX:57314600-57317600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chrX:57314600-57319000	Weak transcription	Liver	Liver
14	chrX:57314600-57320200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chrX:57314600-57321400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chrX:57314600-57328800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chrX:57314800-57315600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chrX:57314800-57315600	Active TSS	Primary T cells from cord blood	blood
19	chrX:57314800-57315600	Weak transcription	Hela-S3	cervix
20	chrX:57314800-57318800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chrX:57315200-57315600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chrX:57315400-57315600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chrX:57315400-57315600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chrX:57315400-57315600	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links