Variant report

Variant	rs5915027
Chromosome Location	chrX:57477230-57477231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121689235..121689772-chrX:57477123..57477731,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1048358	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap]
rs1073967	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs10855185	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs1113635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs1116848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs1160711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs12393264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs12559310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs12687268	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12688558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12689809	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs12689811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1367830	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap]
rs1431677	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap]
rs1469592	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1560514	0.87[ASW][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs1583200	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1594503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs1594508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1601317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1601318	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1835692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1835696	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1835698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1864695	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1864697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1997715	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap]
rs2015312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs2060113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2116364	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs2116365	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap]
rs2116366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2163537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2195766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2213510	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2499549	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2499550	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2499555	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap]
rs2516019	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2516020	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2516023	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap]
rs4030473	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4129399	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4319228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4326513	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4557841	0.85[ASW][hapmap];0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs4587468	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs4607761	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4826346	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs4826349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs4826550	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap]
rs4826551	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826553	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs4826568	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5914074	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs5914084	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5914085	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5914095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs5914100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914107	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914118	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5914962	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap]
rs5914980	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5914993	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5914994	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap]
rs5914999	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs5915005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs5915016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5915019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5915052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs5960270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960951	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs5960956	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs5960960	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs5960961	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5960969	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5960970	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611612	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6611615	0.87[CHD][hapmap]
rs6611626	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs6612796	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs7059676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs717848	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs7885658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs957721	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs980735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57443000-57480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chrX:57469000-57481000	Weak transcription	Fetal Intestine Large	intestine
3	chrX:57470200-57479200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chrX:57470200-57486000	Weak transcription	Gastric	stomach
5	chrX:57471000-57481800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chrX:57474400-57477400	Enhancers	HUVEC	blood vessel
7	chrX:57474600-57479400	Weak transcription	Pancreas	Pancrea
8	chrX:57474600-57480000	Weak transcription	Fetal Intestine Small	intestine
9	chrX:57474800-57479800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chrX:57474800-57480400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chrX:57475000-57477400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chrX:57477200-57480000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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