Variant report

Variant	rs5960969
Chromosome Location	chrX:57426371-57426372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1048358	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1073967	0.94[CEU][hapmap];0.83[JPT][hapmap]
rs10855185	0.93[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1113635	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1116848	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1160711	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12393264	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12559310	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12687268	0.94[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs12688558	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12689809	0.94[CEU][hapmap];0.92[JPT][hapmap]
rs12689811	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1367830	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1431677	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1469592	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs1560514	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs1583200	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs1594503	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1594508	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1601317	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1601318	0.94[CEU][hapmap];0.93[CHB][hapmap]
rs1835692	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1835696	0.93[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap]
rs1835698	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1864695	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1864697	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1997715	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs2015312	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2060113	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2116364	0.87[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs2116365	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs2116366	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2163537	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2195766	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2213510	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2499549	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2499550	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2499555	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs2516019	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2516020	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2516023	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs4030473	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs4129399	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs4319228	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs4326513	0.88[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs4557841	0.80[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4587468	0.92[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs4607761	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs4826346	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs4826349	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4826550	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4826551	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs4826553	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4826568	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5914074	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5914084	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5914085	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5914095	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs5914097	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5914100	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs5914107	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5914118	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5914962	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5914980	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5914993	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5914994	0.94[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5914999	0.93[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs5915005	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5915016	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs5915019	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs5915027	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5915052	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5960270	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs5960951	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5960956	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5960960	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs5960961	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs5960970	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs5960980	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6611612	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs6611626	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6612796	0.86[CHB][hapmap]
rs7059676	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs717848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7885658	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs957721	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs980735	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57405600-57426400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chrX:57419800-57436800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chrX:57424000-57429200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links