Variant report

Variant	rs2217529
Chromosome Location	chrX:57480465-57480466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10855185	0.91[YRI][hapmap]
rs1113635	0.95[YRI][hapmap]
rs1160711	0.86[YRI][hapmap]
rs12559310	0.82[YRI][hapmap]
rs12689809	0.95[YRI][hapmap]
rs1586242	0.95[YRI][hapmap]
rs1594503	0.91[YRI][hapmap]
rs1594506	0.95[YRI][hapmap]
rs1835693	1.00[YRI][hapmap]
rs1864695	0.96[YRI][hapmap]
rs1864697	0.96[YRI][hapmap]
rs2015312	0.91[YRI][hapmap]
rs2116364	0.95[YRI][hapmap]
rs2195766	0.87[YRI][hapmap]
rs2352862	0.91[YRI][hapmap]
rs2982252	0.91[YRI][hapmap]
rs2982254	0.91[YRI][hapmap]
rs3015275	0.88[YRI][hapmap]
rs4030473	0.95[YRI][hapmap]
rs4129399	0.96[YRI][hapmap]
rs4342754	0.85[YRI][hapmap]
rs4607761	0.96[YRI][hapmap]
rs4826346	0.95[YRI][hapmap]
rs4826349	0.91[YRI][hapmap]
rs4826568	0.96[YRI][hapmap]
rs5914074	0.95[YRI][hapmap]
rs5914097	0.95[YRI][hapmap]
rs5914961	0.95[YRI][hapmap]
rs5914999	0.95[YRI][hapmap]
rs5915005	0.91[YRI][hapmap]
rs5915019	0.96[YRI][hapmap]
rs5915047	1.00[YRI][hapmap]
rs5915052	0.95[YRI][hapmap]
rs5960270	0.91[YRI][hapmap]
rs5960951	0.95[YRI][hapmap]
rs5960956	0.95[YRI][hapmap]
rs5960960	0.95[YRI][hapmap]
rs5960961	0.96[YRI][hapmap]
rs5960975	0.95[YRI][hapmap]
rs5961026	0.83[YRI][hapmap]
rs7059676	0.95[YRI][hapmap]
rs717848	0.91[YRI][hapmap]
rs7885658	0.96[YRI][hapmap]
rs980735	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57443000-57480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chrX:57469000-57481000	Weak transcription	Fetal Intestine Large	intestine
3	chrX:57470200-57486000	Weak transcription	Gastric	stomach
4	chrX:57471000-57481800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chrX:57478600-57480600	Enhancers	HUVEC	blood vessel
6	chrX:57479400-57480600	ZNF genes & repeats	Pancreas	Pancrea
7	chrX:57480000-57480600	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chrX:57480000-57481000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chrX:57480400-57480600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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