Variant report

Variant	rs5914091
Chromosome Location	chrX:57394102-57394103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57388138..57390014-chrX:57392401..57395147,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12559310	0.86[YRI][hapmap]
rs1431676	1.00[YRI][hapmap]
rs1583201	0.90[YRI][hapmap]
rs1586242	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap]
rs1594506	0.81[YRI][hapmap]
rs1821117	1.00[ASW][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs1835693	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs2116363	1.00[YRI][hapmap]
rs2499551	1.00[YRI][hapmap]
rs2516025	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4418471	1.00[YRI][hapmap]
rs4826543	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5914082	1.00[YRI][hapmap]
rs5914099	1.00[YRI][hapmap]
rs5914961	0.90[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs5914963	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5914981	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs5914989	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5915047	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs5960261	1.00[ASW][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5960967	1.00[YRI][hapmap]
rs5960975	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs6612776	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57388200-57401600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chrX:57389400-57394600	Weak transcription	Fetal Intestine Large	intestine
3	chrX:57389800-57405200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chrX:57390400-57419600	Weak transcription	Primary T cells from cord blood	blood
5	chrX:57390800-57421000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chrX:57392000-57394400	Weak transcription	Liver	Liver
7	chrX:57392000-57423600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chrX:57392600-57394600	Weak transcription	Fetal Intestine Small	intestine
9	chrX:57393000-57394200	Strong transcription	Pancreas	Pancrea
10	chrX:57393800-57395200	Enhancers	Dnd41	blood
11	chrX:57394000-57395200	Enhancers	Brain Angular Gyrus	brain
12	chrX:57394000-57395200	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links