Variant report

Variant	rs5960967
Chromosome Location	chrX:57421541-57421542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12559310	0.86[YRI][hapmap]
rs1431676	1.00[YRI][hapmap]
rs1583201	0.91[YRI][hapmap]
rs1594506	0.83[YRI][hapmap]
rs1821117	1.00[YRI][hapmap]
rs2116363	1.00[YRI][hapmap]
rs2499551	1.00[YRI][hapmap]
rs2516025	1.00[YRI][hapmap]
rs2982253	0.91[YRI][hapmap]
rs3015276	0.91[YRI][hapmap]
rs3021363	1.00[YRI][hapmap]
rs4418471	1.00[YRI][hapmap]
rs4826543	1.00[YRI][hapmap]
rs5914082	1.00[YRI][hapmap]
rs5914091	1.00[YRI][hapmap]
rs5914099	1.00[YRI][hapmap]
rs5914961	0.82[YRI][hapmap]
rs5914963	1.00[YRI][hapmap]
rs5914981	1.00[YRI][hapmap]
rs5914989	1.00[YRI][hapmap]
rs5960261	1.00[YRI][hapmap]
rs6612776	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57392000-57423600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chrX:57405600-57426400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chrX:57407800-57422600	Weak transcription	Liver	Liver
4	chrX:57417400-57425000	Weak transcription	Pancreas	Pancrea
5	chrX:57419200-57422400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chrX:57419600-57421600	Strong transcription	Primary T cells from cord blood	blood
7	chrX:57419600-57422200	Weak transcription	Left Ventricle	heart
8	chrX:57419800-57436800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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