Variant report

Variant	rs5914963
Chromosome Location	chrX:57328186-57328187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57020780..57022599-chrX:57328126..57330828,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204271	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12559310	0.86[YRI][hapmap]
rs1431676	1.00[YRI][hapmap]
rs1583201	0.90[YRI][hapmap]
rs1586242	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap]
rs1594506	0.81[YRI][hapmap]
rs1821117	1.00[ASW][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs1835693	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs2116363	1.00[YRI][hapmap]
rs2499551	1.00[YRI][hapmap]
rs2516025	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs378487	0.86[YRI][hapmap]
rs4418471	1.00[YRI][hapmap]
rs4826543	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5914082	1.00[YRI][hapmap]
rs5914091	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5914099	1.00[YRI][hapmap]
rs5914897	0.81[YRI][hapmap]
rs5914961	0.90[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap]
rs5914981	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs5914989	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5915047	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs5960261	1.00[ASW][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5960967	1.00[YRI][hapmap]
rs5960975	0.81[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs6612776	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57314600-57328800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chrX:57316000-57329200	Weak transcription	Hela-S3	cervix
3	chrX:57316400-57336800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chrX:57316600-57339400	Weak transcription	Primary T cells from cord blood	blood
5	chrX:57319600-57337800	Weak transcription	Fetal Intestine Large	intestine
6	chrX:57321000-57337800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chrX:57322200-57328400	Weak transcription	Dnd41	blood
8	chrX:57322200-57329400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chrX:57322200-57339200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chrX:57322400-57338000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chrX:57322400-57341400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chrX:57323200-57328800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chrX:57323200-57337600	Weak transcription	Pancreas	Pancrea

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