Variant report

Variant	rs1431676
Chromosome Location	chrX:57514902-57514903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12559310	0.86[YRI][hapmap]
rs1583201	0.91[YRI][hapmap]
rs1594506	0.83[YRI][hapmap]
rs1821117	1.00[YRI][hapmap]
rs2116363	1.00[YRI][hapmap]
rs2516025	1.00[YRI][hapmap]
rs2982253	0.91[YRI][hapmap]
rs3015276	0.91[YRI][hapmap]
rs3021363	1.00[YRI][hapmap]
rs4418471	1.00[YRI][hapmap]
rs4826543	1.00[YRI][hapmap]
rs5914082	1.00[YRI][hapmap]
rs5914091	1.00[YRI][hapmap]
rs5914099	1.00[YRI][hapmap]
rs5914961	0.82[YRI][hapmap]
rs5914963	1.00[YRI][hapmap]
rs5914981	1.00[YRI][hapmap]
rs5914989	1.00[YRI][hapmap]
rs5960261	1.00[YRI][hapmap]
rs5960967	1.00[YRI][hapmap]
rs6612776	1.00[YRI][hapmap]
rs7883631	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57509800-57516600	Weak transcription	Liver	Liver
2	chrX:57512000-57516800	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links