Variant report

Variant	rs2516025
Chromosome Location	chrX:57317705-57317706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57312436..57314636-chrX:57314680..57317965,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165591	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12559310	0.86[YRI][hapmap]
rs1431676	1.00[YRI][hapmap]
rs1583201	0.90[YRI][hapmap]
rs1586242	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap]
rs1594506	0.81[YRI][hapmap]
rs1821117	1.00[ASW][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs1835693	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs2116363	1.00[YRI][hapmap]
rs2499551	1.00[YRI][hapmap]
rs378487	0.86[YRI][hapmap]
rs4418471	1.00[YRI][hapmap]
rs4826543	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5914082	1.00[YRI][hapmap]
rs5914091	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5914099	1.00[YRI][hapmap]
rs5914897	0.81[YRI][hapmap]
rs5914961	0.90[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs5914963	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5914981	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs5914989	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5915047	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs5960261	1.00[ASW][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5960967	1.00[YRI][hapmap]
rs5960975	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs6612776	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6612804	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411994	chrX:57316177-57319275	Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57312800-57318000	Active TSS	Primary T helper cells PMA-I stimulated	--
2	chrX:57314000-57317800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chrX:57314200-57321400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chrX:57314400-57319000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chrX:57314400-57319000	Weak transcription	Fetal Intestine Large	intestine
6	chrX:57314400-57319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chrX:57314400-57321400	Weak transcription	Pancreas	Pancrea
8	chrX:57314400-57322400	Weak transcription	Duodenum Mucosa	Duodenum
9	chrX:57314600-57319000	Weak transcription	Liver	Liver
10	chrX:57314600-57320200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chrX:57314600-57321400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chrX:57314600-57328800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chrX:57314800-57318800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chrX:57315600-57320600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chrX:57315600-57321400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chrX:57316000-57329200	Weak transcription	Hela-S3	cervix
17	chrX:57316400-57336800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chrX:57316600-57318600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chrX:57316600-57321200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chrX:57316600-57321200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chrX:57316600-57339400	Weak transcription	Primary T cells from cord blood	blood
22	chrX:57317000-57317800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chrX:57317600-57318000	Enhancers	Pancreatic Islets	Pancreatic Islet

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