The 2.0 version of rSNPBase

Variant report

Variant rs2988398
Chromosome Location chr1:10602758-10602759
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10577000-10603600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr1:10579400-10610200 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr1:10584800-10603800 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr1:10585200-10603600 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr1:10585200-10603800 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:10589400-10664800 Weak transcription Aorta Aorta
7 chr1:10590200-10602800 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr1:10590200-10605200 Weak transcription NHDF-Ad bronchial
9 chr1:10591000-10639400 Weak transcription Hela-S3 cervix
10 chr1:10591400-10609000 Weak transcription Small Intestine intestine
11 chr1:10591400-10629200 Weak transcription Primary hematopoietic stem cells blood
12 chr1:10591600-10616000 Weak transcription ES-WA7 Cell Line embryonic stem cell
13 chr1:10592200-10615800 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr1:10593000-10603800 Weak transcription Fetal Brain Female brain
15 chr1:10593400-10603600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr1:10594600-10604400 Strong transcription Fetal Intestine Small intestine
17 chr1:10595800-10603000 Strong transcription Monocytes-CD14+_RO01746 blood
18 chr1:10596400-10603200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr1:10596800-10602800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr1:10597200-10604800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr1:10598600-10621800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr1:10599400-10603200 Strong transcription GM12878-XiMat blood
23 chr1:10599800-10608400 Weak transcription Brain Cingulate Gyrus brain
24 chr1:10599800-10610000 Weak transcription Stomach Mucosa stomach
25 chr1:10600000-10608200 Weak transcription Fetal Brain Male brain
26 chr1:10600000-10615600 Weak transcription Muscle Satellite Cultured Cells --
27 chr1:10600000-10615800 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:10600000-10619600 Weak transcription Brain Substantia Nigra brain
29 chr1:10600200-10614800 Weak transcription Brain Angular Gyrus brain
30 chr1:10600200-10615800 Weak transcription HSMM muscle
31 chr1:10601000-10604600 Strong transcription Duodenum Mucosa Duodenum
32 chr1:10601000-10607600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr1:10601000-10613000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr1:10601200-10603000 Strong transcription Liver Liver
35 chr1:10601200-10603000 Strong transcription NHLF lung
36 chr1:10601200-10603200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr1:10601200-10613400 Weak transcription Osteobl bone
38 chr1:10601200-10619600 Weak transcription Brain Anterior Caudate brain
39 chr1:10601400-10603200 Weak transcription Colon Smooth Muscle Colon
40 chr1:10601400-10604600 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr1:10601400-10604600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:10601400-10610400 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr1:10601400-10611000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr1:10601400-10611000 Weak transcription HUES6 Cell Line embryonic stem cell
45 chr1:10601400-10615600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:10601600-10603000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
47 chr1:10601600-10603000 Weak transcription Brain Germinal Matrix brain
48 chr1:10601600-10603200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:10601600-10604400 Strong transcription Fetal Stomach stomach
50 chr1:10601600-10607000 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015