Variant report
| Variant | rs2998996 |
|---|---|
| Chromosome Location | chr6:55084249-55084250 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs3006851 | 1.00[AMR][1000 genomes] |
| rs3006855 | 1.00[AMR][1000 genomes] |
| rs3006856 | 1.00[AMR][1000 genomes] |
| rs3134688 | 1.00[AMR][1000 genomes] |
| rs3134695 | 1.00[AMR][1000 genomes] |
| rs3134697 | 1.00[AMR][1000 genomes] |
| rs3134702 | 1.00[AMR][1000 genomes] |
| rs3134709 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9475139 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016461 | chr6:55038131-55129663 | Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
