Variant report

Variant	rs300343
Chromosome Location	chr2:142043874-142043875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1850698	1.00[AMR][1000 genomes]
rs2714202	1.00[YRI][hapmap]
rs28360754	1.00[EUR][1000 genomes]
rs28671124	1.00[EUR][1000 genomes]
rs300341	1.00[YRI][hapmap]
rs300345	1.00[YRI][hapmap]
rs300347	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs300366	0.92[YRI][hapmap]
rs300371	1.00[AMR][1000 genomes]
rs300372	1.00[AMR][1000 genomes]
rs300373	1.00[AMR][1000 genomes]
rs300385	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs300387	1.00[AMR][1000 genomes]
rs300395	1.00[YRI][hapmap]
rs300402	1.00[YRI][hapmap]
rs300404	1.00[YRI][hapmap]
rs445580	1.00[YRI][hapmap]
rs4483982	1.00[EUR][1000 genomes]
rs55664640	1.00[EUR][1000 genomes]
rs56264415	1.00[EUR][1000 genomes]
rs57527539	1.00[EUR][1000 genomes]
rs57656201	1.00[EUR][1000 genomes]
rs60602889	1.00[EUR][1000 genomes]
rs6429881	1.00[EUR][1000 genomes]
rs72981924	1.00[AMR][1000 genomes]
rs73962857	1.00[EUR][1000 genomes]
rs7576488	1.00[EUR][1000 genomes]
rs7586783	1.00[EUR][1000 genomes]
rs7604986	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1005236	chr2:141860005-142047695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv535948	chr2:141860005-142047695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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