Variant report

Variant	rs3018408
Chromosome Location	chr1:174790686-174790687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:174790148..174791754-chr1:174795715..174797239,2	K562	blood:
2	chr1:174790254..174793205-chr1:174795715..174797901,2	K562	blood:
3	chr1:174780388..174782499-chr1:174789949..174791564,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10912815	0.84[AMR][1000 genomes]
rs10912816	0.84[AMR][1000 genomes]
rs10912818	0.84[AMR][1000 genomes]
rs10912819	0.84[AMR][1000 genomes]
rs12057359	0.89[AMR][1000 genomes]
rs12066268	0.89[AMR][1000 genomes]
rs12072909	0.89[AMR][1000 genomes]
rs1231828	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1329280	0.81[AFR][1000 genomes]
rs1612104	0.95[AMR][1000 genomes]
rs1653637	0.95[AMR][1000 genomes]
rs173000	0.89[AMR][1000 genomes]
rs189141	0.89[AMR][1000 genomes]
rs2760059	0.84[AMR][1000 genomes]
rs2981895	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2987871	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2987878	0.85[AFR][1000 genomes]
rs3123641	0.84[AMR][1000 genomes]
rs332766	0.84[AMR][1000 genomes]
rs332780	0.84[AMR][1000 genomes]
rs332785	0.89[AMR][1000 genomes]
rs332792	0.89[AMR][1000 genomes]
rs333419	0.84[AMR][1000 genomes]
rs392368	0.84[AMR][1000 genomes]
rs4309037	0.89[AMR][1000 genomes]
rs454643	0.84[AMR][1000 genomes]
rs56106555	0.89[AMR][1000 genomes]
rs58238388	0.95[AMR][1000 genomes]
rs59073370	0.80[AFR][1000 genomes]
rs60283543	0.80[AFR][1000 genomes]
rs6696432	0.91[AFR][1000 genomes]
rs74126855	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv548198	chr1:174731596-174800872	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1824383	chr1:174764839-174801748	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1844306	chr1:174764839-174801748	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1819206	chr1:174764839-174802731	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1844208	chr1:174764839-174818547	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1847553	chr1:174764839-174818547	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv1820274	chr1:174782523-174802731	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174770000-174794200	Weak transcription	Fetal Thymus	thymus
2	chr1:174772200-174796600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr1:174777600-174799800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:174782000-174800800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:174782200-174794800	Weak transcription	Fetal Intestine Small	intestine
6	chr1:174782200-174813000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr1:174782600-174799200	Weak transcription	Liver	Liver
8	chr1:174784400-174797200	Weak transcription	Esophagus	oesophagus
9	chr1:174784800-174806600	Weak transcription	HSMMtube	muscle
10	chr1:174785600-174796000	Weak transcription	Primary B cells from cord blood	blood
11	chr1:174785600-174796800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr1:174786800-174798200	Weak transcription	Left Ventricle	heart
13	chr1:174789000-174797400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:174789200-174794000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links