Variant report

Variant	rs189141
Chromosome Location	chr1:174714107-174714108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:174128255..174130462-chr1:174712983..174715321,2	K562	blood:
2	chr1:174633951..174635550-chr1:174711716..174714165,2	K562	blood:
3	chr1:174712656..174714668-chr1:174719793..174722004,2	K562	blood:

Variant related genes	Relation type
ENSG00000227373	Chromatin interaction
ENSG00000152061	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10912801	1.00[EUR][1000 genomes]
rs10912808	1.00[EUR][1000 genomes]
rs10912809	1.00[EUR][1000 genomes]
rs10912815	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912816	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912818	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912819	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912847	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912851	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912858	1.00[EUR][1000 genomes]
rs10912864	1.00[EUR][1000 genomes]
rs11806870	1.00[EUR][1000 genomes]
rs12057161	1.00[EUR][1000 genomes]
rs12057359	0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064144	1.00[EUR][1000 genomes]
rs12066268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12066421	1.00[EUR][1000 genomes]
rs12067791	1.00[EUR][1000 genomes]
rs12068187	0.81[AMR][1000 genomes]
rs12068625	1.00[EUR][1000 genomes]
rs12069689	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070082	1.00[EUR][1000 genomes]
rs12072909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075193	1.00[EUR][1000 genomes]
rs12077283	1.00[EUR][1000 genomes]
rs12077880	1.00[EUR][1000 genomes]
rs12078714	1.00[EUR][1000 genomes]
rs12080070	1.00[EUR][1000 genomes]
rs12080242	1.00[EUR][1000 genomes]
rs12084999	1.00[EUR][1000 genomes]
rs12088650	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12092811	1.00[EUR][1000 genomes]
rs12095683	1.00[TSI][hapmap]
rs12096717	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1231828	1.00[EUR][1000 genomes]
rs12354111	1.00[EUR][1000 genomes]
rs1329280	0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1612104	0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618234	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1653631	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1653633	1.00[EUR][1000 genomes]
rs1653637	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16847457	1.00[EUR][1000 genomes]
rs173000	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1754356	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17838246	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2116515	1.00[EUR][1000 genomes]
rs2760059	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2981891	1.00[EUR][1000 genomes]
rs2981895	1.00[EUR][1000 genomes]
rs2987871	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2987878	1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3018408	0.89[AMR][1000 genomes]
rs3123641	0.83[ASW][hapmap];0.88[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs332766	0.86[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs332775	1.00[EUR][1000 genomes]
rs332780	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs332785	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs332790	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs332792	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs333419	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs333425	1.00[EUR][1000 genomes]
rs333434	1.00[EUR][1000 genomes]
rs35582650	1.00[EUR][1000 genomes]
rs392368	0.83[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4290116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4309037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs454643	0.94[AMR][1000 genomes]
rs55659406	1.00[EUR][1000 genomes]
rs56106555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56357087	1.00[EUR][1000 genomes]
rs58238388	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59073370	1.00[EUR][1000 genomes]
rs60283543	1.00[EUR][1000 genomes]
rs6672781	1.00[EUR][1000 genomes]
rs6696432	1.00[EUR][1000 genomes]
rs6701696	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126848	1.00[EUR][1000 genomes]
rs74126851	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128516	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174706000-174730400	Weak transcription	Aorta	Aorta
2	chr1:174706200-174734000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:174707200-174715000	Weak transcription	Fetal Heart	heart
4	chr1:174708000-174722000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:174710200-174719800	Weak transcription	GM12878-XiMat	blood
6	chr1:174711800-174745600	Weak transcription	Primary B cells from cord blood	blood
7	chr1:174712000-174716000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:174712400-174735000	Weak transcription	Fetal Intestine Small	intestine
9	chr1:174712600-174715000	Weak transcription	K562	blood
10	chr1:174713400-174714800	Enhancers	NHDF-Ad	bronchial
11	chr1:174713400-174716000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:174713600-174714400	Enhancers	Muscle Satellite Cultured Cells	--

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