Variant report

Variant	rs10912847
Chromosome Location	chr1:174868824-174868825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174868186..174869826-chr1:174973166..174975572,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10912851	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912858	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912864	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11806870	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12057161	1.00[EUR][1000 genomes]
rs12066421	1.00[EUR][1000 genomes]
rs12068625	1.00[EUR][1000 genomes]
rs12070082	1.00[EUR][1000 genomes]
rs12075193	1.00[EUR][1000 genomes]
rs12084999	1.00[EUR][1000 genomes]
rs12088650	1.00[EUR][1000 genomes]
rs12095683	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12096717	1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1231828	1.00[EUR][1000 genomes]
rs1329280	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1612104	1.00[EUR][1000 genomes]
rs1618234	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1653631	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1653633	1.00[EUR][1000 genomes]
rs1653637	1.00[EUR][1000 genomes]
rs16847457	1.00[EUR][1000 genomes]
rs16847505	0.87[LWK][hapmap];0.81[MKK][hapmap]
rs173000	1.00[EUR][1000 genomes]
rs1754356	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs189141	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2116515	1.00[EUR][1000 genomes]
rs2760059	1.00[EUR][1000 genomes]
rs2901862	0.83[AMR][1000 genomes]
rs2981891	1.00[EUR][1000 genomes]
rs2981895	1.00[EUR][1000 genomes]
rs2987871	1.00[EUR][1000 genomes]
rs2987878	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3123641	1.00[EUR][1000 genomes]
rs332766	1.00[EUR][1000 genomes]
rs332775	1.00[EUR][1000 genomes]
rs332780	1.00[EUR][1000 genomes]
rs332785	1.00[EUR][1000 genomes]
rs332790	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs332792	1.00[EUR][1000 genomes]
rs333419	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs333425	1.00[EUR][1000 genomes]
rs333434	1.00[EUR][1000 genomes]
rs392368	1.00[EUR][1000 genomes]
rs58238388	1.00[EUR][1000 genomes]
rs59073370	1.00[EUR][1000 genomes]
rs60283543	1.00[EUR][1000 genomes]
rs6672781	1.00[EUR][1000 genomes]
rs6696432	1.00[EUR][1000 genomes]
rs74128516	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174844800-174871600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:174844800-174874400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:174844800-174877400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:174846800-174874000	Weak transcription	Ovary	ovary
5	chr1:174847000-174869200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:174847600-174874400	Weak transcription	Esophagus	oesophagus
7	chr1:174850200-174874800	Weak transcription	Fetal Stomach	stomach
8	chr1:174850400-174869600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:174852000-174873400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:174852800-174874800	Weak transcription	Spleen	Spleen
11	chr1:174853400-174870200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:174856800-174876400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:174857000-174870800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:174857000-174871200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:174858000-174871200	Weak transcription	Lung	lung
16	chr1:174859000-174874000	Weak transcription	Brain Angular Gyrus	brain
17	chr1:174859600-174873400	Weak transcription	K562	blood
18	chr1:174861400-174871200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr1:174861400-174876200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:174861400-174902400	Weak transcription	Left Ventricle	heart
21	chr1:174862800-174882400	Weak transcription	Fetal Lung	lung
22	chr1:174863200-174883200	Weak transcription	Small Intestine	intestine
23	chr1:174863400-174881400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr1:174863600-174873800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr1:174863600-174874200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr1:174863800-174869600	Weak transcription	Primary T cells from cord blood	blood
27	chr1:174863800-174876000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:174863800-174883000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:174864200-174882000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr1:174864600-174874000	Weak transcription	Aorta	Aorta
31	chr1:174866600-174869000	Strong transcription	Primary B cells from cord blood	blood
32	chr1:174866600-174871000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:174866800-174871400	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr1:174866800-174871400	Weak transcription	Gastric	stomach
35	chr1:174867200-174871000	Weak transcription	Pancreas	Pancrea
36	chr1:174867400-174871800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
37	chr1:174867600-174869000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr1:174867600-174869000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr1:174868200-174870600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr1:174868400-174869600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr1:174868400-174870000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
42	chr1:174868400-174871400	Weak transcription	Stomach Mucosa	stomach
43	chr1:174868400-174873400	Weak transcription	Fetal Intestine Large	intestine
44	chr1:174868600-174871200	Weak transcription	Liver	Liver
45	chr1:174868600-174872800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr1:174868800-174869600	Enhancers	Fetal Heart	heart
47	chr1:174868800-174870000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:174868800-174874800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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