Variant report

Variant	rs332790
Chromosome Location	chr1:174709679-174709680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174703505..174705143-chr1:174708728..174710934,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10912801	1.00[EUR][1000 genomes]
rs10912808	1.00[EUR][1000 genomes]
rs10912809	1.00[EUR][1000 genomes]
rs10912815	1.00[EUR][1000 genomes]
rs10912816	1.00[EUR][1000 genomes]
rs10912818	1.00[EUR][1000 genomes]
rs10912819	1.00[EUR][1000 genomes]
rs10912847	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912851	1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912858	1.00[EUR][1000 genomes]
rs10912864	1.00[EUR][1000 genomes]
rs11806870	1.00[EUR][1000 genomes]
rs12057161	1.00[EUR][1000 genomes]
rs12057359	1.00[EUR][1000 genomes]
rs12064144	1.00[EUR][1000 genomes]
rs12066268	1.00[EUR][1000 genomes]
rs12066421	1.00[EUR][1000 genomes]
rs12067791	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12068625	1.00[EUR][1000 genomes]
rs12069689	1.00[EUR][1000 genomes]
rs12070082	1.00[EUR][1000 genomes]
rs12072909	1.00[EUR][1000 genomes]
rs12075193	1.00[EUR][1000 genomes]
rs12077283	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077880	1.00[EUR][1000 genomes]
rs12078714	1.00[EUR][1000 genomes]
rs12080070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12080242	1.00[EUR][1000 genomes]
rs12084999	1.00[EUR][1000 genomes]
rs12088650	1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12092811	1.00[EUR][1000 genomes]
rs12095683	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12096717	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1231828	1.00[EUR][1000 genomes]
rs12354111	1.00[EUR][1000 genomes]
rs1329280	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1612104	1.00[EUR][1000 genomes]
rs1618234	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1653631	0.92[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1653633	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1653637	1.00[EUR][1000 genomes]
rs16847457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs173000	1.00[EUR][1000 genomes]
rs1754356	0.92[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17838246	0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs189141	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2116515	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2760059	1.00[EUR][1000 genomes]
rs2981891	1.00[EUR][1000 genomes]
rs2981895	1.00[EUR][1000 genomes]
rs2987871	1.00[EUR][1000 genomes]
rs2987878	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3123641	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs332766	1.00[EUR][1000 genomes]
rs332775	1.00[EUR][1000 genomes]
rs332780	1.00[EUR][1000 genomes]
rs332785	1.00[EUR][1000 genomes]
rs332792	1.00[EUR][1000 genomes]
rs333419	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs333425	0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs333434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35582650	1.00[EUR][1000 genomes]
rs392368	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4290116	1.00[EUR][1000 genomes]
rs4309037	1.00[EUR][1000 genomes]
rs55659406	1.00[EUR][1000 genomes]
rs56106555	1.00[EUR][1000 genomes]
rs56357087	1.00[EUR][1000 genomes]
rs58238388	1.00[EUR][1000 genomes]
rs59073370	1.00[EUR][1000 genomes]
rs60283543	1.00[EUR][1000 genomes]
rs6672781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6696432	1.00[EUR][1000 genomes]
rs6701696	1.00[EUR][1000 genomes]
rs74126848	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74126851	1.00[EUR][1000 genomes]
rs74126855	1.00[EUR][1000 genomes]
rs74128516	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174705800-174712200	Weak transcription	Left Ventricle	heart
2	chr1:174706000-174730400	Weak transcription	Aorta	Aorta
3	chr1:174706200-174734000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:174707000-174709800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:174707200-174715000	Weak transcription	Fetal Heart	heart
6	chr1:174707600-174712200	Weak transcription	Liver	Liver
7	chr1:174708000-174722000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:174708600-174710600	Enhancers	Fetal Intestine Large	intestine
9	chr1:174709000-174709800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:174709200-174711400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:174709200-174713200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:174709400-174710000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:174709400-174710000	Enhancers	HMEC	breast
14	chr1:174709400-174710200	Enhancers	GM12878-XiMat	blood
15	chr1:174709400-174711800	Enhancers	Primary B cells from cord blood	blood
16	chr1:174709400-174712600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:174709600-174713400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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