Variant report

Variant	rs10912851
Chromosome Location	chr1:174891875-174891876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174844677..174847367-chr1:174890743..174892759,2	K562	blood:

Variant related genes	Relation type
ENSG00000152061	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10912847	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912858	1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs10912864	1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs11806870	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12057161	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12066421	1.00[EUR][1000 genomes]
rs12068625	1.00[EUR][1000 genomes]
rs12070082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075193	1.00[EUR][1000 genomes]
rs12076591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084999	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095683	0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs12096717	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1231828	1.00[EUR][1000 genomes]
rs1329280	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1612104	1.00[EUR][1000 genomes]
rs1618234	1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1653631	1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1653633	1.00[EUR][1000 genomes]
rs1653637	1.00[EUR][1000 genomes]
rs16847457	1.00[EUR][1000 genomes]
rs173000	1.00[EUR][1000 genomes]
rs1754356	1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs189141	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2116515	1.00[EUR][1000 genomes]
rs2981891	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2981895	1.00[EUR][1000 genomes]
rs2987871	1.00[EUR][1000 genomes]
rs2987878	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs332766	1.00[EUR][1000 genomes]
rs332775	1.00[EUR][1000 genomes]
rs332780	1.00[EUR][1000 genomes]
rs332785	1.00[EUR][1000 genomes]
rs332790	1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs332792	1.00[EUR][1000 genomes]
rs333419	1.00[EUR][1000 genomes]
rs333425	1.00[EUR][1000 genomes]
rs333434	1.00[EUR][1000 genomes]
rs58238388	1.00[EUR][1000 genomes]
rs59073370	1.00[EUR][1000 genomes]
rs60283543	1.00[EUR][1000 genomes]
rs6696432	1.00[EUR][1000 genomes]
rs74128516	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174861400-174902400	Weak transcription	Left Ventricle	heart
2	chr1:174872800-174900400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:174873400-174897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:174874000-174910000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:174874200-174938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:174876800-174933600	Weak transcription	Aorta	Aorta
7	chr1:174883600-174900600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:174885400-174892600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:174886000-174897000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:174886000-174907200	Weak transcription	Primary T cells from cord blood	blood
11	chr1:174886400-174896600	Weak transcription	Pancreas	Pancrea
12	chr1:174886400-174911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:174888800-174897000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:174889200-174897200	Weak transcription	Fetal Intestine Large	intestine
15	chr1:174889600-174897200	Weak transcription	Fetal Intestine Small	intestine
16	chr1:174889600-174907400	Weak transcription	Primary B cells from cord blood	blood
17	chr1:174889800-174896600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:174889800-174900000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr1:174890000-174892200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:174890000-174899600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:174890000-174900600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:174891200-174892200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr1:174891200-174893400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:174891400-174892200	Enhancers	Fetal Muscle Leg	muscle
25	chr1:174891600-174892000	Enhancers	HSMMtube	muscle
26	chr1:174891600-174896600	Weak transcription	Gastric	stomach
27	chr1:174891800-174897000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:174891800-174908600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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