Variant report

Variant	rs301908
Chromosome Location	chr5:37103806-37103807
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10061157	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10073054	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10079030	0.80[EUR][1000 genomes]
rs10941321	0.82[EUR][1000 genomes]
rs13169211	0.87[ASN][1000 genomes]
rs13171526	0.84[ASN][1000 genomes]
rs2098713	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs216385	0.80[EUR][1000 genomes]
rs301863	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs301867	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs301869	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs301872	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs301873	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs301874	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs301878	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs301905	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs301906	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs301909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6451313	0.88[EUR][1000 genomes]
rs6860727	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6886108	0.81[EUR][1000 genomes]
rs6887958	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7711452	0.84[EUR][1000 genomes]
rs7715883	0.83[EUR][1000 genomes]
rs7729404	0.84[EUR][1000 genomes]
rs7735138	0.84[EUR][1000 genomes]
rs9632396	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv917880	chr5:36948778-37115342	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	esv1802391	chr5:36958598-37242600	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv597822	chr5:36997953-37147152	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv534064	chr5:37054962-37586210	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
11	nsv964844	chr5:37080836-37107123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv881511	chr5:37088627-37552852	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37064200-37105000	Weak transcription	Fetal Brain Male	brain
2	chr5:37064600-37104000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:37065000-37107600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:37067000-37111400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:37078800-37105000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:37080200-37112000	Weak transcription	Fetal Heart	heart
7	chr5:37082000-37109000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:37082800-37169200	Weak transcription	Spleen	Spleen
9	chr5:37087000-37104400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:37087000-37105200	Weak transcription	Lung	lung
11	chr5:37087000-37107000	Weak transcription	Pancreas	Pancrea
12	chr5:37087200-37106800	Weak transcription	Hela-S3	cervix
13	chr5:37087200-37113600	Weak transcription	NH-A	brain
14	chr5:37087600-37105000	Weak transcription	Osteobl	bone
15	chr5:37092600-37104600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:37092600-37104800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr5:37092800-37104400	Weak transcription	Ovary	ovary
18	chr5:37094200-37106400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:37097800-37107000	Weak transcription	Brain Angular Gyrus	brain
20	chr5:37098400-37104400	Weak transcription	Aorta	Aorta
21	chr5:37099400-37107600	Weak transcription	Gastric	stomach
22	chr5:37099800-37104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:37099800-37105000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:37100000-37106800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:37100800-37112000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr5:37101000-37107200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:37101200-37107600	Weak transcription	Right Ventricle	heart
28	chr5:37101200-37115000	Weak transcription	A549	lung
29	chr5:37101400-37105000	Weak transcription	Liver	Liver
30	chr5:37101400-37113400	Weak transcription	Brain Substantia Nigra	brain
31	chr5:37101800-37104400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr5:37102200-37107600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr5:37102200-37108000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr5:37102200-37114400	Weak transcription	HMEC	breast
35	chr5:37102400-37105400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:37102400-37105400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr5:37102400-37105600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr5:37102400-37105800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:37102600-37104400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:37102600-37104800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:37102600-37107600	Weak transcription	Psoas Muscle	Psoas
42	chr5:37102600-37109400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:37102600-37115800	Strong transcription	HSMM	muscle
44	chr5:37102600-37121600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:37102800-37107600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr5:37102800-37110800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr5:37102800-37111600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr5:37102800-37112200	Weak transcription	HUVEC	blood vessel
49	chr5:37102800-37114200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr5:37103000-37105600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links