Variant report
| Variant | rs3020006 |
|---|---|
| Chromosome Location | chr11:93722059-93722060 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1518561 | 0.94[ASN][1000 genomes] |
| rs1518567 | 0.82[EUR][1000 genomes] |
| rs1518568 | 0.83[EUR][1000 genomes] |
| rs1518569 | 0.89[EUR][1000 genomes] |
| rs1518574 | 0.85[CEU][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs1914724 | 0.89[EUR][1000 genomes] |
| rs1960895 | 0.84[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs2139091 | 0.90[EUR][1000 genomes] |
| rs2139092 | 0.90[EUR][1000 genomes] |
| rs2174638 | 0.82[EUR][1000 genomes] |
| rs2174640 | 0.91[EUR][1000 genomes] |
| rs2203794 | 0.85[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs2213109 | 0.85[CEU][hapmap];0.83[GIH][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs2460051 | 0.88[EUR][1000 genomes] |
| rs2462741 | 0.85[CEU][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs2462742 | 0.84[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs2511382 | 0.88[EUR][1000 genomes] |
| rs2511388 | 0.83[EUR][1000 genomes] |
| rs2511404 | 0.88[EUR][1000 genomes] |
| rs2945633 | 0.94[ASN][1000 genomes] |
| rs2949864 | 0.95[ASN][1000 genomes] |
| rs2949866 | 0.95[ASN][1000 genomes] |
| rs2949870 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049467 | chr11:93651025-93778717 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv555965 | chr11:93713911-93747735 | Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs3020006 | FAT3 | cis | parietal | SCAN |
| rs3020006 | SRSF8 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:93722000-93722800 | Flanking Active TSS | K562 | blood |
