Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11605140	0.81[EUR][1000 genomes]
rs12222414	0.82[EUR][1000 genomes]
rs1506658	0.81[EUR][1000 genomes]
rs1518561	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2135527	0.96[EUR][1000 genomes]
rs2939619	0.84[EUR][1000 genomes]
rs2939620	0.93[EUR][1000 genomes]
rs2945632	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2945635	0.96[EUR][1000 genomes]
rs2945636	0.94[EUR][1000 genomes]
rs2949855	0.95[EUR][1000 genomes]
rs2949864	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2949865	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2949866	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2949867	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2949868	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2949869	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2949870	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3020005	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3020006	0.94[ASN][1000 genomes]
rs59527139	0.82[EUR][1000 genomes]
rs60833228	0.82[EUR][1000 genomes]
rs67268439	0.81[EUR][1000 genomes]
rs7113975	0.82[EUR][1000 genomes]
rs908752	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs995932	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93752200-93758000	Weak transcription	NH-A	brain
2	chr11:93755600-93760600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:93755800-93761200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:93756200-93759000	Enhancers	HMEC	breast
5	chr11:93756600-93758000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:93756800-93758000	Enhancers	K562	blood
7	chr11:93757000-93758000	Enhancers	Fetal Lung	lung
8	chr11:93757200-93758000	Enhancers	NHEK	skin
9	chr11:93757400-93759400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:93757600-93757800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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