Variant report

Variant	rs3024441
Chromosome Location	chr6:6181768-6181769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11966779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17141883	1.00[EUR][1000 genomes]
rs56988705	1.00[EUR][1000 genomes]
rs73359901	1.00[EUR][1000 genomes]
rs73361804	1.00[EUR][1000 genomes]
rs73361810	1.00[EUR][1000 genomes]
rs922867	1.00[EUR][1000 genomes]
rs9502422	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504633	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6146800-6200400	Weak transcription	Placenta	Placenta
2	chr6:6179400-6195000	Weak transcription	Adipose Nuclei	Adipose
3	chr6:6180600-6191600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:6181400-6184400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:6181600-6182600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:6181600-6184600	Weak transcription	HSMMtube	muscle
7	chr6:6181600-6193000	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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