Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11966779	1.00[EUR][1000 genomes]
rs13196774	1.00[JPT][hapmap]
rs17141887	0.83[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3024358	1.00[JPT][hapmap]
rs3024362	1.00[JPT][hapmap]
rs3024370	1.00[JPT][hapmap]
rs3024378	1.00[JPT][hapmap]
rs3024380	1.00[JPT][hapmap]
rs3024381	1.00[JPT][hapmap]
rs3024382	1.00[JPT][hapmap]
rs3024387	1.00[JPT][hapmap]
rs3024389	1.00[JPT][hapmap]
rs3024441	1.00[EUR][1000 genomes]
rs4959375	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56988705	1.00[EUR][1000 genomes]
rs73359901	1.00[EUR][1000 genomes]
rs73361804	1.00[EUR][1000 genomes]
rs73361810	1.00[EUR][1000 genomes]
rs73361840	1.00[ASN][1000 genomes]
rs7769467	1.00[JPT][hapmap]
rs922867	1.00[EUR][1000 genomes]
rs9502422	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6223600-6251600	Weak transcription	HSMM	muscle
2	chr6:6225200-6247600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:6246600-6247200	Enhancers	Fetal Kidney	kidney
4	chr6:6246600-6247600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:6246800-6247200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:6246800-6247200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:6246800-6248200	Strong transcription	HSMMtube	muscle
8	chr6:6247000-6247200	Enhancers	GM12878-XiMat	blood

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