Variant report

Variant	rs13196774
Chromosome Location	chr6:6271614-6271615
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12529193	0.96[AFR][1000 genomes]
rs13204446	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17141883	1.00[JPT][hapmap]
rs17141887	1.00[JPT][hapmap]
rs17374745	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3024358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3024362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3024370	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3024378	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3024380	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3024381	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3024382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3024387	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3024389	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4959375	1.00[JPT][hapmap]
rs56291442	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6936721	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7769467	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9766026	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6265800-6310000	Weak transcription	HSMM	muscle
2	chr6:6270800-6275400	Weak transcription	HSMMtube	muscle
3	chr6:6271000-6271800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:6271400-6271800	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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