Variant report

Variant	rs6936721
Chromosome Location	chr6:6257712-6257713
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:6249809..6251527-chr6:6255458..6257833,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13196774	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13204446	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17141916	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17374745	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs3024358	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3024362	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3024365	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3024369	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3024373	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3844194	0.85[ASN][1000 genomes]
rs3851511	0.96[ASN][1000 genomes]
rs3892797	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3895270	0.93[ASN][1000 genomes]
rs3895271	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs56291442	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61296735	0.81[ASN][1000 genomes]
rs61352140	0.83[ASN][1000 genomes]
rs6597197	0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs7744744	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9766026	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6250400-6262600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:6250800-6258400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:6255400-6257800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:6255600-6257800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:6255800-6260400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:6256200-6257800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:6256400-6257800	Enhancers	HSMM	muscle
8	chr6:6256400-6258000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:6256400-6258000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:6256400-6258400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:6256600-6258000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:6256600-6258000	Enhancers	HSMMtube	muscle
13	chr6:6256600-6258600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:6257000-6257800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:6257000-6257800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:6257000-6257800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:6257200-6258000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:6257600-6257800	Enhancers	Placenta	Placenta
19	chr6:6257600-6258000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr6:6257600-6258200	Bivalent Enhancer	Stomach Mucosa	stomach
21	chr6:6257600-6260400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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