Variant report

Variant	rs61352140
Chromosome Location	chr6:6269026-6269027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13204446	0.81[ASN][1000 genomes]
rs17141916	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3024369	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3024373	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3844194	0.95[ASN][1000 genomes]
rs3851511	0.82[ASN][1000 genomes]
rs3892797	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56291442	0.97[ASN][1000 genomes]
rs61296735	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6936721	0.83[ASN][1000 genomes]
rs9766026	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6265800-6310000	Weak transcription	HSMM	muscle
2	chr6:6267200-6271000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:6268800-6271400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:6269000-6270800	Strong transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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