Variant report

Variant	rs3844194
Chromosome Location	chr6:6260604-6260605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13204446	0.83[ASN][1000 genomes]
rs17141916	0.92[ASN][1000 genomes]
rs3024365	0.82[ASN][1000 genomes]
rs3024369	0.92[ASN][1000 genomes]
rs3024370	0.81[AMR][1000 genomes]
rs3024373	0.92[ASN][1000 genomes]
rs3851511	0.83[ASN][1000 genomes]
rs3892797	0.92[ASN][1000 genomes]
rs3895270	0.81[ASN][1000 genomes]
rs3895271	0.83[ASN][1000 genomes]
rs56291442	0.98[ASN][1000 genomes]
rs61296735	0.92[ASN][1000 genomes]
rs61352140	0.95[ASN][1000 genomes]
rs6597197	0.83[ASN][1000 genomes]
rs6936721	0.85[ASN][1000 genomes]
rs7744744	0.83[ASN][1000 genomes]
rs9766026	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6250400-6262600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:6257800-6267200	Weak transcription	Placenta	Placenta
3	chr6:6258000-6261600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:6258000-6266400	Weak transcription	HSMMtube	muscle
5	chr6:6260000-6262400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:6260200-6260800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:6260200-6260800	Enhancers	Gastric	stomach
8	chr6:6260200-6260800	Strong transcription	HSMM	muscle
9	chr6:6260400-6260800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:6260400-6261000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:6260400-6261000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:6260600-6260800	Bivalent Enhancer	Stomach Mucosa	stomach
13	chr6:6260600-6261000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:6260600-6261000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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