Variant report

Variant	rs56291442
Chromosome Location	chr6:6264135-6264136
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13196774	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13204446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141916	0.94[ASN][1000 genomes]
rs17374745	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3024358	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3024362	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3024365	0.81[ASN][1000 genomes]
rs3024369	0.94[ASN][1000 genomes]
rs3024373	0.94[ASN][1000 genomes]
rs3844194	0.98[ASN][1000 genomes]
rs3851511	0.82[ASN][1000 genomes]
rs3892797	0.94[ASN][1000 genomes]
rs3895271	0.82[ASN][1000 genomes]
rs61296735	0.94[ASN][1000 genomes]
rs61352140	0.97[ASN][1000 genomes]
rs6597197	0.82[ASN][1000 genomes]
rs6936721	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7744744	0.82[ASN][1000 genomes]
rs9766026	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6257800-6267200	Weak transcription	Placenta	Placenta
2	chr6:6258000-6266400	Weak transcription	HSMMtube	muscle
3	chr6:6260800-6264200	Weak transcription	HSMM	muscle
4	chr6:6262400-6268800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:6263800-6265000	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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