Variant report

Variant	rs73359901
Chromosome Location	chr6:6228130-6228131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11966779	1.00[EUR][1000 genomes]
rs17141883	1.00[EUR][1000 genomes]
rs3024441	1.00[EUR][1000 genomes]
rs56988705	1.00[EUR][1000 genomes]
rs73361804	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73361810	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs922867	1.00[EUR][1000 genomes]
rs9502422	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6220600-6230200	Weak transcription	Placenta	Placenta
2	chr6:6222600-6237200	Weak transcription	HSMMtube	muscle
3	chr6:6223600-6251600	Weak transcription	HSMM	muscle
4	chr6:6225200-6247600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:6225400-6243400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:6226600-6229400	Weak transcription	Psoas Muscle	Psoas
7	chr6:6226800-6229800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:6226800-6229800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:6227200-6230000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:6227800-6228400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links