Variant report

Variant	rs3026942
Chromosome Location	chr1:159131857-159131858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159131846..159132446-chr1:159181062..159181654,2	MCF-7	breast:
2	chr1:159130503..159131891-chr1:159183672..159184667,5	MCF-7	breast:
3	chr1:159130498..159131890-chr1:159181009..159182449,9	MCF-7	breast:
4	chr1:159131371..159131957-chr1:159861090..159861964,2	MCF-7	breast:
5	chr1:159130884..159133204-chr1:159134351..159136805,2	K562	blood:

rs_ID	r²[population]
rs12042284	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3026955	0.86[EUR][1000 genomes]
rs56184975	0.86[EUR][1000 genomes]
rs61828174	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61828178	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159112600-159132800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:159130600-159132000	Enhancers	HSMM	muscle
3	chr1:159130800-159132000	Enhancers	Colon Smooth Muscle	Colon
4	chr1:159131000-159132000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:159131000-159132800	Enhancers	HMEC	breast
6	chr1:159131000-159133000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:159131200-159132000	Enhancers	HSMMtube	muscle
8	chr1:159131400-159132000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:159131400-159132000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:159131400-159132200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:159131400-159132400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:159131400-159132600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:159131400-159133000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:159131400-159133000	Enhancers	NHEK	skin
15	chr1:159131400-159133200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr1:159131600-159132000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:159131800-159132000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:159131800-159132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:159131800-159133200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:159131800-159137400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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