Variant report

Variant	rs303379
Chromosome Location	chr13:61557123-61557124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10454647	0.95[ASN][1000 genomes]
rs12873856	0.95[ASN][1000 genomes]
rs12874317	0.95[ASN][1000 genomes]
rs12875533	0.90[ASN][1000 genomes]
rs1606713	0.95[ASN][1000 genomes]
rs1606714	0.95[ASN][1000 genomes]
rs1857724	0.87[AMR][1000 genomes]
rs2090140	0.95[ASN][1000 genomes]
rs2134864	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2134867	0.83[AMR][1000 genomes]
rs2174312	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2203393	0.95[ASN][1000 genomes]
rs2323085	0.95[ASN][1000 genomes]
rs2671872	0.87[AMR][1000 genomes]
rs2874956	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs302885	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs302887	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs302892	0.83[AMR][1000 genomes]
rs34987489	0.90[ASN][1000 genomes]
rs35258988	0.90[ASN][1000 genomes]
rs35323626	0.95[ASN][1000 genomes]
rs35381210	0.95[ASN][1000 genomes]
rs67034893	0.85[ASN][1000 genomes]
rs71211318	0.85[AFR][1000 genomes]
rs71434982	0.95[ASN][1000 genomes]
rs71434984	0.95[ASN][1000 genomes]
rs71434986	0.95[ASN][1000 genomes]
rs73203738	0.95[ASN][1000 genomes]
rs7320944	0.82[AFR][1000 genomes]
rs7981565	0.95[ASN][1000 genomes]
rs7992324	0.95[ASN][1000 genomes]
rs9528268	0.82[AFR][1000 genomes]
rs9528269	0.82[AFR][1000 genomes]
rs9538990	0.82[AMR][1000 genomes]
rs9538992	0.83[AMR][1000 genomes]
rs9538996	0.82[AFR][1000 genomes]
rs9592078	0.95[ASN][1000 genomes]
rs9592079	0.95[ASN][1000 genomes]
rs9592080	0.95[ASN][1000 genomes]
rs9598208	0.95[ASN][1000 genomes]
rs9598223	0.95[ASN][1000 genomes]
rs9598225	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900242	chr13:61551100-61600601	Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61552800-61564000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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