Variant report

Variant	rs302892
Chromosome Location	chr13:61545390-61545391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10454647	0.80[ASN][1000 genomes]
rs11840967	0.95[ASN][1000 genomes]
rs12873856	0.80[ASN][1000 genomes]
rs12874317	0.80[ASN][1000 genomes]
rs1606713	0.80[ASN][1000 genomes]
rs1606714	0.80[ASN][1000 genomes]
rs1857724	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090140	0.80[ASN][1000 genomes]
rs2134864	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2134867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203393	0.80[ASN][1000 genomes]
rs2274655	0.95[ASN][1000 genomes]
rs2323085	0.80[ASN][1000 genomes]
rs2671872	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2874956	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs302885	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs302887	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs303379	0.83[AMR][1000 genomes]
rs35323626	0.80[ASN][1000 genomes]
rs35381210	0.80[ASN][1000 genomes]
rs3884484	1.00[ASN][1000 genomes]
rs71434982	0.80[ASN][1000 genomes]
rs71434984	0.80[ASN][1000 genomes]
rs71434986	0.80[ASN][1000 genomes]
rs73203738	0.80[ASN][1000 genomes]
rs7328316	1.00[ASN][1000 genomes]
rs7981565	0.80[ASN][1000 genomes]
rs7992324	0.80[ASN][1000 genomes]
rs9538990	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9538992	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570410	0.82[AFR][1000 genomes]
rs9592078	0.80[ASN][1000 genomes]
rs9592079	0.80[ASN][1000 genomes]
rs9592080	0.80[ASN][1000 genomes]
rs9598207	1.00[ASN][1000 genomes]
rs9598208	0.80[ASN][1000 genomes]
rs9598223	0.80[ASN][1000 genomes]
rs9598225	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61544200-61546400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:61545000-61545600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr13:61545200-61546600	Weak transcription	Fetal Heart	heart

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