Variant report

Variant	rs2874956
Chromosome Location	chr13:61552751-61552752
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10454647	1.00[ASN][1000 genomes]
rs12873856	1.00[ASN][1000 genomes]
rs12874317	1.00[ASN][1000 genomes]
rs12875533	0.95[ASN][1000 genomes]
rs1606713	1.00[ASN][1000 genomes]
rs1606714	1.00[ASN][1000 genomes]
rs1857724	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2090140	1.00[ASN][1000 genomes]
rs2134864	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2134867	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2174312	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2203393	1.00[ASN][1000 genomes]
rs2323085	1.00[ASN][1000 genomes]
rs2671872	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs302885	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302892	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs303379	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34987489	0.95[ASN][1000 genomes]
rs35258988	0.95[ASN][1000 genomes]
rs35323626	1.00[ASN][1000 genomes]
rs35381210	1.00[ASN][1000 genomes]
rs3884484	0.80[ASN][1000 genomes]
rs67034893	0.90[ASN][1000 genomes]
rs71434982	1.00[ASN][1000 genomes]
rs71434984	1.00[ASN][1000 genomes]
rs71434986	1.00[ASN][1000 genomes]
rs73203738	1.00[ASN][1000 genomes]
rs7320944	0.82[AFR][1000 genomes]
rs7328316	0.80[ASN][1000 genomes]
rs7981565	1.00[ASN][1000 genomes]
rs7992324	1.00[ASN][1000 genomes]
rs9528268	0.82[AFR][1000 genomes]
rs9528269	0.82[AFR][1000 genomes]
rs9538990	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9538992	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9538996	0.82[AFR][1000 genomes]
rs9592078	1.00[ASN][1000 genomes]
rs9592079	1.00[ASN][1000 genomes]
rs9592080	1.00[ASN][1000 genomes]
rs9598207	0.80[ASN][1000 genomes]
rs9598208	1.00[ASN][1000 genomes]
rs9598223	1.00[ASN][1000 genomes]
rs9598225	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3428346	chr13:61550376-61553324	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3426019	chr13:61550701-61553049	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv1792479	chr13:61551100-61553581	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv1798493	chr13:61551100-61553581	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv1801476	chr13:61551100-61553581	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv1801693	chr13:61551100-61553581	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv1795956	chr13:61551100-61553700	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	esv1796779	chr13:61551100-61553700	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv511514	chr13:61551100-61556688	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv900242	chr13:61551100-61600601	Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv512321	chr13:61552749-61554301	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61551800-61552800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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