Variant report
| Variant | rs7328316 |
|---|---|
| Chromosome Location | chr13:61545573-61545574 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10454647 | 0.80[ASN][1000 genomes] |
| rs11840967 | 0.95[ASN][1000 genomes] |
| rs12873856 | 0.80[ASN][1000 genomes] |
| rs12874317 | 0.80[ASN][1000 genomes] |
| rs1606713 | 0.80[ASN][1000 genomes] |
| rs1606714 | 0.80[ASN][1000 genomes] |
| rs1857724 | 1.00[ASN][1000 genomes] |
| rs2090140 | 0.80[ASN][1000 genomes] |
| rs2134864 | 0.80[ASN][1000 genomes] |
| rs2134867 | 1.00[ASN][1000 genomes] |
| rs2203393 | 0.80[ASN][1000 genomes] |
| rs2274655 | 0.95[ASN][1000 genomes] |
| rs2323085 | 0.80[ASN][1000 genomes] |
| rs2671872 | 1.00[ASN][1000 genomes] |
| rs2874956 | 0.80[ASN][1000 genomes] |
| rs302885 | 0.80[ASN][1000 genomes] |
| rs302887 | 0.80[ASN][1000 genomes] |
| rs302892 | 1.00[ASN][1000 genomes] |
| rs35323626 | 0.80[ASN][1000 genomes] |
| rs35381210 | 0.80[ASN][1000 genomes] |
| rs3884484 | 1.00[ASN][1000 genomes] |
| rs71434982 | 0.80[ASN][1000 genomes] |
| rs71434984 | 0.80[ASN][1000 genomes] |
| rs71434986 | 0.80[ASN][1000 genomes] |
| rs73203738 | 0.80[ASN][1000 genomes] |
| rs73221655 | 0.89[AMR][1000 genomes] |
| rs7981565 | 0.80[ASN][1000 genomes] |
| rs7992324 | 0.80[ASN][1000 genomes] |
| rs9538990 | 1.00[ASN][1000 genomes] |
| rs9538992 | 1.00[ASN][1000 genomes] |
| rs9592078 | 0.80[ASN][1000 genomes] |
| rs9592079 | 0.80[ASN][1000 genomes] |
| rs9592080 | 0.80[ASN][1000 genomes] |
| rs9598207 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9598208 | 0.80[ASN][1000 genomes] |
| rs9598223 | 0.80[ASN][1000 genomes] |
| rs9598225 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832624 | chr13:61383648-61553974 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv832626 | chr13:61545191-61698233 | Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61544200-61546400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr13:61545000-61545600 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |
| 3 | chr13:61545200-61546600 | Weak transcription | Fetal Heart | heart |
