Variant report

Variant	rs304797
Chromosome Location	chr7:80025778-80025779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12667590	0.82[ASN][1000 genomes]
rs17153795	0.82[ASN][1000 genomes]
rs17547287	0.82[ASN][1000 genomes]
rs2906199	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs304766	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs304781	0.93[EUR][1000 genomes]
rs304784	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs304785	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs304796	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs304798	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs304799	1.00[EUR][1000 genomes]
rs304801	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467133	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs6467134	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs764907	0.82[ASN][1000 genomes]
rs7792158	0.92[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80017200-80029400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:80023600-80029600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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