Variant report

Variant	rs2906199
Chromosome Location	chr7:79997946-79997947
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:79997911-79997961	HCT-116	colon:	n/a
2	chr7:79997911-79997961	NHDF-neo	bronchial:	n/a
3	chr7:79997911-79997961	AoSMC	blood vessel:	n/a
4	chr7:79997911-79997961	NH-A	brain:	n/a
5	chr7:79997911-79997961	NT2-D1	testis:	n/a
6	chr7:79997911-79997961	PFSK-1	brain:	n/a
7	chr7:79997911-79997961	LNCaP	prostate:	n/a
8	chr7:79997911-79997961	U87	brain:	n/a
9	chr7:79997911-79997961	HRCEpiC	kidney:	n/a
10	chr7:79997911-79997961	HCF	heart:	n/a
11	chr7:79997911-79997961	HNPCEpiC	eye:	n/a
12	chr7:79997911-79997961	IMR90	lung:	fetal
13	chr7:79997911-79997961	PANC-1	pancreas:	n/a
14	chr7:79997911-79997961	HL-60	blood:	n/a
15	chr7:79997911-79997961	HRPEpiC	eye:	n/a
16	chr7:79997911-79997961	H1-hESC	embryonic stem cell:	embryo
17	chr7:79997911-79997961	Hepatocyte	liver:	n/a
18	chr7:79997911-79997961	HCPEpiC	choroid plexus:	n/a
19	chr7:79997911-79997961	PrEC	prostate:	n/a
20	chr7:79997911-79997961	AG09319	gingival:	n/a
21	chr7:79997911-79997961	GM12892	blood:	n/a
22	chr7:79997911-79997961	SK-N-SH_RA	brain:	n/a
23	chr7:79997911-79997961	MCF-7	breast:	n/a
24	chr7:79997911-79997961	AG04450	lung:	fetal
25	chr7:79997911-79997961	RPTEC	kidney:	n/a
26	chr7:79997911-79997961	GM06990	blood:	n/a
27	chr7:79997911-79997961	AG10803	skin:	n/a
28	chr7:79997911-79997961	SK-N-SH	brain:	n/a
29	chr7:79997911-79997961	BE2_C	brain:	n/a
30	chr7:79997911-79997961	HIPEpiC	eye:	n/a
31	chr7:79997911-79997961	GM12878	blood:	n/a
32	chr7:79997911-79997961	A549	lung:	n/a
33	chr7:79997911-79997961	NHBE	bronchial:	n/a
34	chr7:79997911-79997961	HMEC	breast:	n/a
35	chr7:79997911-79997961	HAEpiC	amniotic membrane:	n/a
36	chr7:79997911-79997961	GM19239	blood:	n/a
37	chr7:79997911-79997961	T-47D	breast:	n/a
38	chr7:79997911-79997961	Hela-S3	cervix:	n/a
39	chr7:79997911-79997961	SK-N-MC	brain:	n/a
40	chr7:79997911-79997961	HUVEC	blood vessel:	n/a
41	chr7:79997911-79997961	ProgFib	skin:	n/a
42	chr7:79997911-79997961	Caco-2	colon:	n/a
43	chr7:79997911-79997961	MCF10A-Er-Src	breast:	n/a
44	chr7:79997911-79997961	HPAEpiC	pulmonary alveolar:	n/a
45	chr7:79997911-79997961	HRE	kidney:	n/a
46	chr7:79997911-79997961	K562	blood:	n/a
47	chr7:79997911-79997961	GM12891	blood:	n/a
48	chr7:79997911-79997961	SKMC	muscle:	n/a
49	chr7:79997911-79997961	ECC-1	luminal epithelium:	n/a
50	chr7:79997911-79997961	CMK	blood:	n/a

No data

Variant related genes	Relation type
CD36	CpG island

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10262955	1.00[ASN][1000 genomes]
rs10264032	0.95[ASN][1000 genomes]
rs10269308	0.99[ASN][1000 genomes]
rs12667354	0.96[ASN][1000 genomes]
rs12667590	0.91[ASN][1000 genomes]
rs13234446	0.95[ASN][1000 genomes]
rs17153795	0.91[ASN][1000 genomes]
rs17547287	0.91[ASN][1000 genomes]
rs304738	0.93[ASN][1000 genomes]
rs304742	0.95[ASN][1000 genomes]
rs304754	0.92[ASN][1000 genomes]
rs304766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap]
rs304768	0.82[LWK][hapmap]
rs304784	0.91[ASN][1000 genomes]
rs304785	0.91[ASN][1000 genomes]
rs4636124	0.91[ASN][1000 genomes]
rs57803210	0.99[ASN][1000 genomes]
rs58665903	0.87[ASN][1000 genomes]
rs6467133	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6467134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs726458	0.99[ASN][1000 genomes]
rs764907	0.91[ASN][1000 genomes]
rs7792158	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv525104	chr7:79991029-80002223	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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