Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10262955	0.91[ASN][1000 genomes]
rs10264032	0.96[ASN][1000 genomes]
rs10269308	0.90[ASN][1000 genomes]
rs12667354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12667590	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13234446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17153688	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17153795	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17547287	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2906199	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs304738	0.95[ASN][1000 genomes]
rs304742	0.93[ASN][1000 genomes]
rs304754	0.91[ASN][1000 genomes]
rs304766	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs304784	0.82[ASN][1000 genomes]
rs304785	0.82[ASN][1000 genomes]
rs4731338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4731345	1.00[AFR][1000 genomes]
rs57803210	0.90[ASN][1000 genomes]
rs6467133	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6467134	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs726458	0.90[ASN][1000 genomes]
rs764907	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7792158	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79954200-79975400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79959400-79960400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:79959400-79960400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:79959400-79960400	Enhancers	NHDF-Ad	bronchial
5	chr7:79959400-79960400	Enhancers	NHLF	lung
6	chr7:79959400-79960400	Enhancers	Osteobl	bone
7	chr7:79959400-79961000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:79959400-79961000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:79959400-79961000	Enhancers	HSMM	muscle
10	chr7:79960000-79964800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:79960200-79960400	Enhancers	HSMMtube	muscle

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