Variant report

Variant	rs17153795
Chromosome Location	chr7:80014931-80014932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr7:80014908-80015150	A549	lung:	n/a	n/a
2	NR3C1	chr7:80014919-80015147	A549	lung:	n/a	n/a
3	STAT3	chr7:80014876-80015220	MCF10A-Er-Src	breast:	n/a	n/a
4	FOXA2	chr7:80014901-80015188	HepG2	liver:	n/a	n/a
5	NR2F2	chr7:80014913-80015243	HepG2	liver:	n/a	n/a
6	CEBPB	chr7:80014769-80015338	A549	lung:	n/a	n/a
7	FOXA1	chr7:80014832-80015328	A549	lung:	n/a	n/a
8	NR3C1	chr7:80014818-80015167	A549	lung:	n/a	n/a
9	FOXA1	chr7:80014785-80015287	HepG2	liver:	n/a	n/a
10	STAT3	chr7:80014871-80015208	MCF10A-Er-Src	breast:	n/a	n/a
11	FOXA1	chr7:80014749-80015259	HepG2	liver:	n/a	chr7:80014758-80014770
12	CEBPB	chr7:80014882-80015098	A549	lung:	n/a	n/a
13	FOS	chr7:80014912-80015151	MCF10A-Er-Src	breast:	n/a	n/a
14	STAT3	chr7:80014876-80015234	MCF10A-Er-Src	breast:	n/a	n/a
15	FOXA1	chr7:80014882-80015161	HepG2	liver:	n/a	n/a
16	FOXA1	chr7:80014868-80015282	A549	lung:	n/a	n/a
17	SP1	chr7:80014814-80015273	A549	lung:	n/a	n/a
18	CEBPB	chr7:80014928-80015126	HepG2	liver:	n/a	n/a
19	NR3C1	chr7:80014812-80015116	A549	lung:	n/a	n/a
20	FOXA1	chr7:80014914-80015186	HepG2	liver:	n/a	n/a
21	STAT3	chr7:80014872-80015220	MCF10A-Er-Src	breast:	n/a	n/a
22	FOS	chr7:80014914-80015142	MCF10A-Er-Src	breast:	n/a	n/a
23	CEBPB	chr7:80014878-80015267	A549	lung:	n/a	n/a
24	CEBPB	chr7:80014860-80015197	HepG2	liver:	n/a	n/a
25	FOXA2	chr7:80014563-80015582	HepG2	liver:	n/a	chr7:80014758-80014770
26	TCF12	chr7:80014662-80015391	A549	lung:	n/a	n/a
27	SP1	chr7:80014885-80015247	A549	lung:	n/a	n/a
28	NR3C1	chr7:80014882-80015223	A549	lung:	n/a	n/a
29	MYC	chr7:80014911-80015078	MCF10A-Er-Src	breast:	n/a	n/a
30	FOXA2	chr7:80014774-80015400	A549	lung:	n/a	n/a
31	NR3C1	chr7:80014890-80015199	A549	lung:	n/a	n/a
32	HNF4A	chr7:80014871-80015119	HepG2	liver:	n/a	chr7:80015012-80015027
33	GATA3	chr7:80014830-80015315	A549	lung:	n/a	chr7:80014893-80014904
34	FOS	chr7:80014928-80015066	MCF10A-Er-Src	breast:	n/a	n/a
35	ARID3A	chr7:80014872-80015255	HepG2	liver:	n/a	n/a
36	FOS	chr7:80014911-80015167	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000232667	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10262955	0.91[ASN][1000 genomes]
rs10264032	0.86[ASN][1000 genomes]
rs10269308	0.90[ASN][1000 genomes]
rs12667354	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12667590	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13234446	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17153688	1.00[AFR][1000 genomes]
rs17547287	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2906199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs304738	0.85[ASN][1000 genomes]
rs304742	0.86[ASN][1000 genomes]
rs304754	0.83[ASN][1000 genomes]
rs304766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs304784	1.00[ASN][1000 genomes]
rs304785	1.00[ASN][1000 genomes]
rs304797	0.82[ASN][1000 genomes]
rs304801	0.82[ASN][1000 genomes]
rs4636124	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4731338	1.00[AFR][1000 genomes]
rs4731345	1.00[AFR][1000 genomes]
rs57803210	0.90[ASN][1000 genomes]
rs58665903	0.81[ASN][1000 genomes]
rs6467133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6467134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs726458	0.90[ASN][1000 genomes]
rs764907	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7792158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80009000-80015000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:80009200-80017200	Weak transcription	Fetal Kidney	kidney
3	chr7:80009400-80017000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:80012800-80016800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:80013600-80015200	Enhancers	Liver	Liver
6	chr7:80013600-80015200	Enhancers	Fetal Intestine Large	intestine
7	chr7:80014200-80016400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:80014400-80015400	Enhancers	Fetal Intestine Small	intestine
9	chr7:80014400-80015800	Enhancers	HepG2	liver
10	chr7:80014400-80017400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:80014600-80015400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:80014600-80015400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:80014600-80016000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:80014800-80015000	Enhancers	A549	lung
15	chr7:80014800-80015200	Enhancers	Hela-S3	cervix
16	chr7:80014800-80015200	Enhancers	HMEC	breast
17	chr7:80014800-80015200	Flanking Active TSS	HUVEC	blood vessel
18	chr7:80014800-80015200	Enhancers	NHLF	lung

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