Variant report
| Variant | rs304738 |
|---|---|
| Chromosome Location | chr7:79966545-79966546 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10262955 | 0.93[ASN][1000 genomes] |
| rs10264032 | 0.99[ASN][1000 genomes] |
| rs10269308 | 0.95[ASN][1000 genomes] |
| rs10486931 | 0.91[EUR][1000 genomes] |
| rs12667354 | 0.97[ASN][1000 genomes] |
| rs12667590 | 0.85[ASN][1000 genomes] |
| rs13234446 | 0.99[ASN][1000 genomes] |
| rs17153795 | 0.85[ASN][1000 genomes] |
| rs17547287 | 0.85[ASN][1000 genomes] |
| rs2906199 | 0.93[ASN][1000 genomes] |
| rs304739 | 1.00[EUR][1000 genomes] |
| rs304741 | 0.93[EUR][1000 genomes] |
| rs304742 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs304743 | 0.93[EUR][1000 genomes] |
| rs304744 | 0.93[EUR][1000 genomes] |
| rs304745 | 0.93[EUR][1000 genomes] |
| rs304746 | 0.93[EUR][1000 genomes] |
| rs304747 | 0.93[EUR][1000 genomes] |
| rs304748 | 0.91[EUR][1000 genomes] |
| rs304749 | 0.91[EUR][1000 genomes] |
| rs304750 | 0.91[EUR][1000 genomes] |
| rs304751 | 0.91[EUR][1000 genomes] |
| rs304753 | 0.91[EUR][1000 genomes] |
| rs304754 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs304755 | 0.90[EUR][1000 genomes] |
| rs304784 | 0.85[ASN][1000 genomes] |
| rs304785 | 0.85[ASN][1000 genomes] |
| rs4636124 | 0.95[ASN][1000 genomes] |
| rs485217 | 1.00[EUR][1000 genomes] |
| rs534589 | 1.00[EUR][1000 genomes] |
| rs57803210 | 0.95[ASN][1000 genomes] |
| rs58665903 | 0.83[ASN][1000 genomes] |
| rs6467133 | 0.95[ASN][1000 genomes] |
| rs6467134 | 0.95[ASN][1000 genomes] |
| rs6967989 | 1.00[EUR][1000 genomes] |
| rs6978235 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs726458 | 0.95[ASN][1000 genomes] |
| rs764907 | 0.85[ASN][1000 genomes] |
| rs7790699 | 0.97[EUR][1000 genomes] |
| rs7792158 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024312 | chr7:79832637-80004812 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029180 | chr7:79832637-80017560 | Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv528393 | chr7:79964962-79969058 | Flanking Active TSS Enhancers Active TSS Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79954200-79975400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:79966200-79971200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 3 | chr7:79966400-79966600 | Enhancers | Pancreatic Islets | Pancreatic Islet |
| 4 | chr7:79966400-79966600 | Enhancers | Small Intestine | intestine |
