Variant report

Variant	rs304746
Chromosome Location	chr7:79976937-79976938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10486931	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13226982	1.00[ASN][1000 genomes]
rs304738	0.93[EUR][1000 genomes]
rs304739	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304741	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304742	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs304743	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304744	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304745	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304748	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304749	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304750	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304751	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304753	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304754	0.97[EUR][1000 genomes]
rs304755	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35847026	1.00[ASN][1000 genomes]
rs485217	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534589	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967989	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978235	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790699	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79975200-79978400	Enhancers	HMEC	breast
2	chr7:79975400-79977200	Enhancers	Hela-S3	cervix
3	chr7:79975400-79977800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:79975400-79977800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:79975400-79978000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:79975400-79978000	Enhancers	NHEK	skin
7	chr7:79975400-79978400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:79975600-79977800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:79975800-79977400	Enhancers	Fetal Heart	heart
10	chr7:79975800-79977800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:79975800-79978600	Enhancers	Adipose Nuclei	Adipose
12	chr7:79976000-79977000	Enhancers	HSMMtube	muscle
13	chr7:79976000-79977400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:79976200-79977000	Enhancers	Fetal Lung	lung
15	chr7:79976200-79977200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:79976200-79977800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:79976400-79977600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr7:79976400-79977800	Enhancers	Left Ventricle	heart
19	chr7:79976400-79977800	Enhancers	Right Atrium	heart
20	chr7:79976600-79977400	Enhancers	Colon Smooth Muscle	Colon
21	chr7:79976600-79977600	Enhancers	Stomach Smooth Muscle	stomach
22	chr7:79976800-79978200	Enhancers	HSMM	muscle

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