Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10486931	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13226982	1.00[ASN][1000 genomes]
rs304738	0.97[EUR][1000 genomes]
rs304739	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304741	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304742	0.90[EUR][1000 genomes]
rs304743	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304744	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304745	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304746	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304747	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304748	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304749	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304750	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304751	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304753	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304754	0.87[EUR][1000 genomes]
rs304755	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35847026	1.00[ASN][1000 genomes]
rs485217	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534589	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967989	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978235	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79954200-79975400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79959400-79960000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:79959400-79960000	Enhancers	NH-A	brain
4	chr7:79959400-79960000	Enhancers	NHEK	skin
5	chr7:79959400-79960400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:79959400-79960400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:79959400-79960400	Enhancers	NHDF-Ad	bronchial
8	chr7:79959400-79960400	Enhancers	NHLF	lung
9	chr7:79959400-79960400	Enhancers	Osteobl	bone
10	chr7:79959400-79961000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:79959400-79961000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:79959400-79961000	Enhancers	HSMM	muscle
13	chr7:79959800-79960200	Weak transcription	HSMMtube	muscle

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