Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10486931	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13226982	1.00[ASN][1000 genomes]
rs304738	0.91[EUR][1000 genomes]
rs304739	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304741	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304742	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs304743	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304744	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304745	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304746	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304747	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304748	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304750	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304751	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304754	0.99[EUR][1000 genomes]
rs304755	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35847026	1.00[ASN][1000 genomes]
rs485217	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534589	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467133	0.91[TSI][hapmap]
rs6967989	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978235	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779119	0.93[GIH][hapmap]
rs7790699	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792158	0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs304749	ME1	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79975800-79978600	Enhancers	Adipose Nuclei	Adipose
2	chr7:79977800-79979000	Weak transcription	Fetal Brain Male	brain
3	chr7:79977800-79979200	Weak transcription	Spleen	Spleen
4	chr7:79978000-79979200	Weak transcription	Brain Germinal Matrix	brain
5	chr7:79978400-79984600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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