Variant report

Variant	rs3087978
Chromosome Location	chr6:86388223-86388224
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:458)
CpG islands
(count:61)
Chromatin interactive
region (count:58)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:458 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:86381750-86389506	Hela-S3	cervix:	n/a	n/a
2	E2F6	chr6:86388083-86388300	K562	blood:	n/a	n/a
3	STAT3	chr6:86388042-86388651	MCF10A-Er-Src	breast:	n/a	n/a
4	SP1	chr6:86388187-86388724	K562	blood:	n/a	chr6:86388507-86388519 chr6:86388507-86388518 chr6:86388507-86388519 chr6:86388546-86388556 chr6:86388508-86388522
5	MYC	chr6:86387895-86389636	K562	blood:	n/a	chr6:86389008-86389017 chr6:86389007-86389018
6	POLR2A	chr6:86387789-86388569	HepG2	liver:	n/a	n/a
7	POLR2A	chr6:86388007-86389101	A549	lung:	n/a	n/a
8	CHD2	chr6:86387900-86389291	GM12878	blood:	n/a	n/a
9	ELF1	chr6:86388105-86389035	GM12878	blood:	n/a	chr6:86388837-86388849 chr6:86388913-86388925
10	EP300	chr6:86387400-86389406	GM12878	blood:	n/a	chr6:86389040-86389056 chr6:86388650-86388666
11	MAX	chr6:86387777-86389283	K562	blood:	n/a	chr6:86389008-86389017 chr6:86389007-86389018
12	YY1	chr6:86388139-86388777	GM12891	blood:	n/a	n/a
13	SP4	chr6:86388102-86389341	H1-hESC	embryonic stem cell:	n/a	chr6:86388507-86388518
14	POLR2A	chr6:86386940-86389304	H1-hESC	embryonic stem cell:	n/a	n/a
15	YY1	chr6:86387718-86389273	ECC-1	luminal epithelium:	n/a	n/a
16	POLR2A	chr6:86381804-86389694	K562	blood:	n/a	n/a
17	REST	chr6:86387958-86388580	A549	lung:	n/a	n/a
18	EP300	chr6:86388190-86389546	HepG2	liver:	n/a	chr6:86389040-86389056 chr6:86388650-86388666
19	REST	chr6:86387472-86389238	H1-neurons	neurons:	n/a	n/a
20	ELF1	chr6:86387983-86389177	GM12878	blood:	n/a	chr6:86388837-86388849 chr6:86388913-86388925
21	STAT1	chr6:86388164-86389189	GM12878	blood:	n/a	n/a
22	EP300	chr6:86387884-86389412	ECC-1	luminal epithelium:	n/a	chr6:86389040-86389056 chr6:86388650-86388666
23	TAF1	chr6:86388114-86389150	HepG2	liver:	n/a	n/a
24	EP300	chr6:86387826-86389443	GM12878	blood:	n/a	chr6:86389040-86389056 chr6:86388650-86388666
25	JUN	chr6:86388035-86388882	K562	blood:	n/a	n/a
26	REST	chr6:86387810-86389625	HL-60	blood:	n/a	n/a
27	POU2F2	chr6:86388122-86388863	GM12878	blood:	n/a	n/a
28	MAX	chr6:86387894-86389270	HepG2	liver:	n/a	chr6:86389008-86389017 chr6:86389007-86389018
29	POLR2A	chr6:86387849-86389404	GM12878	blood:	n/a	n/a
30	SIN3AK20	chr6:86387722-86389205	K562	blood:	n/a	n/a
31	TEAD4	chr6:86388113-86389321	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr6:86388080-86388883	A549	lung:	n/a	n/a
33	ETS1	chr6:86388077-86389195	GM12878	blood:	n/a	n/a
34	YY1	chr6:86387726-86389269	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr6:86387658-86389341	K562	blood:	n/a	n/a
36	POLR2A	chr6:86387687-86389267	Hela-S3	cervix:	n/a	n/a
37	ZNF143	chr6:86388032-86389388	H1-hESC	embryonic stem cell:	n/a	chr6:86389060-86389079
38	POLR2A	chr6:86387425-86389393	HL-60	blood:	n/a	n/a
39	HEY1	chr6:86386803-86389291	HepG2	liver:	n/a	n/a
40	RUNX3	chr6:86387800-86389346	GM12878	blood:	n/a	n/a
41	MAX	chr6:86387980-86389311	MCF-7	breast:	n/a	chr6:86389008-86389017 chr6:86389007-86389018
42	MYC	chr6:86387984-86389282	H1-hESC	embryonic stem cell:	n/a	chr6:86389008-86389017 chr6:86389007-86389018
43	POLR2A	chr6:86386861-86389609	GM12892	blood:	n/a	n/a
44	MAX	chr6:86388081-86389247	HUVEC	blood vessel:	n/a	chr6:86389008-86389017 chr6:86389007-86389018
45	RELA	chr6:86387490-86389647	GM15510	blood:	n/a	n/a
46	TBP	chr6:86386818-86389855	Hela-S3	cervix:	n/a	chr6:86388472-86388483
47	POLR2A	chr6:86381512-86389676	PFSK-1	brain:	n/a	n/a
48	MXI1	chr6:86386518-86390564	IMR90	lung:	n/a	n/a
49	MAX	chr6:86387927-86389410	SK-N-SH	brain:	n/a	chr6:86389008-86389017 chr6:86389007-86389018
50	ELK1	chr6:86387293-86389199	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:86388188-86388238	BE2_C	brain:	n/a
2	chr6:86388188-86388238	HRPEpiC	eye:	n/a
3	chr6:86388188-86388238	Caco-2	colon:	n/a
4	chr6:86388188-86388238	MCF-7	breast:	n/a
5	chr6:86388188-86388238	HMEC	breast:	n/a
6	chr6:86388188-86388238	NB4	blood:	n/a
7	chr6:86388188-86388238	HRE	kidney:	n/a
8	chr6:86388188-86388238	HEEpiC	esophagus:	n/a
9	chr6:86388188-86388238	K562	blood:	n/a
10	chr6:86388188-86388238	PrEC	prostate:	n/a
11	chr6:86388188-86388238	ProgFib	skin:	n/a
12	chr6:86388188-86388238	HL-60	blood:	n/a
13	chr6:86388188-86388238	AG04450	lung:	fetal
14	chr6:86388188-86388238	SK-N-SH	brain:	n/a
15	chr6:86388188-86388238	NT2-D1	testis:	n/a
16	chr6:86388188-86388238	HCT-116	colon:	n/a
17	chr6:86388188-86388238	BJ	skin:	n/a
18	chr6:86388188-86388238	SAEC	small airway:	n/a
19	chr6:86388188-86388238	HCPEpiC	choroid plexus:	n/a
20	chr6:86388188-86388238	AG09319	gingival:	n/a
21	chr6:86388188-86388238	NH-A	brain:	n/a
22	chr6:86388188-86388238	SK-N-MC	brain:	n/a
23	chr6:86388188-86388238	HAEpiC	amniotic membrane:	n/a
24	chr6:86388188-86388238	HRCEpiC	kidney:	n/a
25	chr6:86388188-86388238	SKMC	muscle:	n/a
26	chr6:86388188-86388238	T-47D	breast:	n/a
27	chr6:86388188-86388238	A549	lung:	n/a
28	chr6:86388188-86388238	ovcar-3	ovarian:	n/a
29	chr6:86388188-86388238	AG04449	skin:	fetal
30	chr6:86388188-86388238	PFSK-1	brain:	n/a
31	chr6:86388188-86388238	HCM	heart:	n/a
32	chr6:86388188-86388238	NHBE	bronchial:	n/a
33	chr6:86388188-86388238	GM12891	blood:	n/a
34	chr6:86388188-86388238	HCF	heart:	n/a
35	chr6:86388188-86388238	HUVEC	blood vessel:	n/a
36	chr6:86388188-86388238	HepG2	liver:	n/a
37	chr6:86388188-86388238	HNPCEpiC	eye:	n/a
38	chr6:86388188-86388238	LNCaP	prostate:	n/a
39	chr6:86388188-86388238	U87	brain:	n/a
40	chr6:86388188-86388238	AG10803	skin:	n/a
41	chr6:86388188-86388238	NHDF-neo	bronchial:	n/a
42	chr6:86388188-86388238	Hela-S3	cervix:	n/a
43	chr6:86388188-86388238	GM12892	blood:	n/a
44	chr6:86388188-86388238	AG09309	skin:	n/a
45	chr6:86388188-86388238	ECC-1	luminal epithelium:	n/a
46	chr6:86388188-86388238	H1-hESC	embryonic stem cell:	embryo
47	chr6:86388188-86388238	GM06990	blood:	n/a
48	chr6:86388188-86388238	RPTEC	kidney:	n/a
49	chr6:86388188-86388238	HEK293	kidney:	embryo
50	chr6:86388188-86388238	IMR90	lung:	fetal

(count:58 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr11:64878879..64879722-chr6:86388078..86388848,2	HCT-116	colon:
2	chr6:86338689..86357756-chr6:86378394..86390434,115	MCF-7	breast:
3	chr6:86360455..86373602-chr6:86382637..86391992,19	MCF-7	breast:
4	chr6:86388159..86388840-chr7:45038264..45039165,2	Hela-S3	cervix:
5	chr12:54582582..54583203-chr6:86387938..86388805,2	Hela-S3	cervix:
6	chr6:86322647..86325206-chr6:86387381..86389770,2	MCF-7	breast:
7	chr17:62501951..62502569-chr6:86388005..86388789,2	HCT-116	colon:
8	chr6:86287818..86291892-chr6:86385672..86390313,6	MCF-7	breast:
9	chr6:86352417..86353203-chr6:86386848..86388878,6	MCF-7	breast:
10	chr17:73775484..73776235-chr6:86387856..86388540,2	Hela-S3	cervix:
11	chr6:85471670..85475300-chr6:86386961..86389961,4	K562	blood:
12	chr6:86296961..86299849-chr6:86387985..86389629,2	K562	blood:
13	chr6:86323280..86334231-chr6:86380512..86390230,24	K562	blood:
14	chr19:42579420..42580323-chr6:86388195..86389033,2	NB4	blood:
15	chr19:8386127..8386865-chr6:86388018..86388842,3	NB4	blood:
16	chr19:50179802..50180603-chr6:86388047..86388640,2	NB4	blood:
17	chr17:76355730..76356330-chr6:86388191..86388837,2	Hela-S3	cervix:
18	chr6:86387938..86388537-chrX:15693151..15693877,2	Hela-S3	cervix:
19	chr6:86258616..86262862-chr6:86386972..86389770,3	K562	blood:
20	chr19:12901722..12902622-chr6:86387993..86388524,2	Hela-S3	cervix:
21	chr6:30584423..30585893-chr6:86387949..86389099,4	Hela-S3	cervix:
22	chr6:86302271..86307129-chr6:86385631..86390073,11	MCF-7	breast:
23	chr6:86353436..86354584-chr6:86387812..86388533,4	Hela-S3	cervix:
24	chr19:571528..572784-chr6:86388024..86389358,4	Hela-S3	cervix:
25	chr20:32890403..32890932-chr6:86387883..86389053,3	Hela-S3	cervix:
26	chr6:86386878..86389803-chr6:86445514..86448985,3	K562	blood:
27	chr10:38146274..38146953-chr6:86387888..86388601,2	Hela-S3	cervix:
28	chr6:86387690..86388567-chrX:47863298..47863848,2	Hela-S3	cervix:
29	chr6:86246106..86247862-chr6:86386298..86390203,3	K562	blood:
30	chr1:245027355..245028168-chr6:86387910..86388486,2	Hela-S3	cervix:
31	chr16:15187836..15188830-chr6:86388107..86388868,2	Hela-S3	cervix:
32	chr10:74114103..74114912-chr6:86388026..86388936,2	Hela-S3	cervix:
33	chr20:30194850..30195550-chr6:86388024..86388539,2	Hela-S3	cervix:
34	chr19:47760508..47761071-chr6:86388025..86388587,2	Hela-S3	cervix:
35	chr6:86388132..86388698-chr7:157129478..157130022,2	HCT-116	colon:
36	chr6:31773748..31775519-chr6:86387939..86390447,2	MCF-7	breast:
37	chr6:86246140..86247926-chr6:86387829..86390203,2	K562	blood:
38	chr19:39897973..39898580-chr6:86387847..86388601,2	Hela-S3	cervix:
39	chr19:18667882..18668653-chr6:86388042..86388763,2	HCT-116	colon:
40	chr14:64971394..64971969-chr6:86387618..86388524,2	Hela-S3	cervix:
41	chr11:65189854..65190552-chr6:86387963..86388733,2	HCT-116	colon:
42	chr6:86386962..86389714-chr6:87862273..87864563,2	MCF-7	breast:
43	chr1:160990569..160991458-chr6:86388051..86388956,2	HCT-116	colon:
44	chr6:86300286..86310605-chr6:86384413..86390498,39	K562	blood:
45	chr6:86388149..86388913-chr9:140149074..140149944,2	Hela-S3	cervix:
46	chr6:86277967..86280027-chr6:86387160..86389820,3	K562	blood:
47	chr1:153507935..153508859-chr6:86387943..86388842,2	Hela-S3	cervix:
48	chr6:86298349..86307534-chr6:86383938..86391964,31	K562	blood:
49	chr6:86258544..86261104-chr6:86387142..86389153,2	K562	blood:
50	chr1:6844584..6845201-chr6:86387954..86388807,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
SNHG5	TF binding region
SNHG5	CpG island
ENSG00000188986	Chromatin interaction
ENSG00000153187	Chromatin interaction
ENSG00000220563	Chromatin interaction
ENSG00000148719	Chromatin interaction
ENSG00000198105	Chromatin interaction
ENSG00000172270	Chromatin interaction
ENSG00000198668	Chromatin interaction
ENSG00000267855	Chromatin interaction
ENSG00000188994	Chromatin interaction
ENSG00000105732	Chromatin interaction
ENSG00000112837	Chromatin interaction
ENSG00000171223	Chromatin interaction
ENSG00000184557	Chromatin interaction
ENSG00000105700	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000264395	Chromatin interaction
ENSG00000204392	Chromatin interaction
ENSG00000112210	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000250379	Chromatin interaction
ENSG00000101444	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000126457	Chromatin interaction
ENSG00000168970	Chromatin interaction
ENSG00000136280	Chromatin interaction
ENSG00000063046	Chromatin interaction
ENSG00000123415	Chromatin interaction
ENSG00000171489	Chromatin interaction
ENSG00000132475	Chromatin interaction
ENSG00000271793	Chromatin interaction
ENSG00000197956	Chromatin interaction
ENSG00000158769	Chromatin interaction
ENSG00000236514	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000236016	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000237436	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000108654	Chromatin interaction
ENSG00000233927	Chromatin interaction
ENSG00000105993	Chromatin interaction
ENSG00000147118	Chromatin interaction
ENSG00000105321	Chromatin interaction
ENSG00000128016	Chromatin interaction
ENSG00000186312	Chromatin interaction
ENSG00000260735	Chromatin interaction
ENSG00000135316	Chromatin interaction
ENSG00000167774	Chromatin interaction
ENSG00000273175	Chromatin interaction
ENSG00000135317	Chromatin interaction
ENSG00000085721	Chromatin interaction
ENSG00000198738	Chromatin interaction
ENSG00000241172	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000243789	Chromatin interaction
ENSG00000267751	Chromatin interaction
ENSG00000204569	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1059306	0.83[CEU][hapmap]
rs1059307	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10944128	0.81[EUR][1000 genomes]
rs10944129	0.81[EUR][1000 genomes]
rs1173416	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1173417	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs1173418	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11752795	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12193777	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12199873	0.83[CEU][hapmap]
rs12203963	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs12206573	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12212560	0.95[CEU][hapmap]
rs2475790	0.83[CEU][hapmap]
rs2475792	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs2758840	0.82[CEU][hapmap]
rs2758842	0.91[CEU][hapmap]
rs2758843	0.91[CEU][hapmap]
rs2758845	0.91[CEU][hapmap]
rs2758847	0.82[CEU][hapmap]
rs2758848	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2758849	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2783171	0.82[CEU][hapmap]
rs2842600	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2842601	0.82[CEU][hapmap]
rs2842603	0.87[CEU][hapmap]
rs2842605	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2842607	0.82[CEU][hapmap]
rs2842608	0.82[CEU][hapmap]
rs2842609	0.83[CEU][hapmap]
rs2842610	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2842611	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2842612	0.82[CEU][hapmap]
rs2842613	0.82[CEU][hapmap]
rs2842614	0.91[CEU][hapmap];0.81[CHB][hapmap]
rs2842615	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34980280	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4304137	0.83[CEU][hapmap]
rs4348284	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4351223	0.82[CEU][hapmap]
rs4431401	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs4640862	0.91[EUR][1000 genomes]
rs4707211	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs4707212	0.91[EUR][1000 genomes]
rs6454471	0.83[CEU][hapmap]
rs6454472	0.95[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]
rs6909767	0.91[CEU][hapmap]
rs6922	0.82[CEU][hapmap]
rs6927475	0.83[EUR][1000 genomes]
rs6935918	0.91[CEU][hapmap]
rs7452605	0.82[CEU][hapmap]
rs7742201	0.82[CEU][hapmap]
rs7742691	0.95[CEU][hapmap]
rs7766485	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7771612	0.86[CEU][hapmap]
rs7775864	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs911927	0.91[CEU][hapmap]
rs9294337	0.83[CEU][hapmap]
rs9342045	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9344533	0.91[CEU][hapmap]
rs9344540	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9344542	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs9351065	0.82[CEU][hapmap]
rs9353327	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs9362230	0.82[CEU][hapmap]
rs9362232	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9444351	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9444352	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9444354	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9450284	0.82[CEU][hapmap]
rs9450285	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9450288	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs9450292	0.90[EUR][1000 genomes]
rs9450302	0.91[CEU][hapmap]
rs9450311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv886334	chr6:86214507-86394403	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
4	nsv1028293	chr6:86353958-86778912	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
5	nsv538350	chr6:86353958-86778912	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs3087978	SNHG5	cis	multi-tissue	Pritchard
rs3087978	SNHG5	Cis_1M	lymphoblastoid	RTeQTL
rs3087978	SNHG5	cis	Artery Aorta	GTEx
rs3087978	SNHG5	cis	lung	GTEx
rs3087978	SNHG5	cis	Heart Left Ventricle	GTEx
rs3087978	SNHG5	cis	Thyroid	GTEx
rs3087978	SNHG5	cis	Adipose Subcutaneous	GTEx
rs3087978	SNHG5	cis	Skin Sun Exposed Lower leg	GTEx
rs3087978	SNHG5	cis	Nerve Tibial	GTEx
rs3087978	SNHG5	cis	Esophagus Mucosa	GTEx
rs3087978	SNHG5	cis	Stomach	GTEx
rs3087978	SNHG5	cis	Muscle Skeletal	GTEx
rs3087978	SNHG5	cis	Esophagus Muscularis	GTEx
rs3087978	SNHG5	cis	Whole Blood	GTEx
rs3087978	SNHG5	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86384800-86388400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
2	chr6:86385000-86389400	Active TSS	Right Ventricle	heart
3	chr6:86385000-86390200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:86385000-86390400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:86385200-86388800	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr6:86385200-86389000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:86385200-86389800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:86385200-86390000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:86385400-86389400	Active TSS	Aorta	Aorta
10	chr6:86385400-86389400	Active TSS	Ovary	ovary
11	chr6:86385600-86388400	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr6:86385800-86388800	Active TSS	Colonic Mucosa	Colon
13	chr6:86385800-86389000	Active TSS	Stomach Smooth Muscle	stomach
14	chr6:86385800-86389200	Active TSS	Colon Smooth Muscle	Colon
15	chr6:86385800-86389200	Active TSS	Left Ventricle	heart
16	chr6:86385800-86389200	Active TSS	Lung	lung
17	chr6:86385800-86389400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:86385800-86389400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:86386000-86389000	Active TSS	Fetal Intestine Small	intestine
20	chr6:86386000-86389000	Active TSS	HSMMtube	muscle
21	chr6:86386000-86389200	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr6:86386000-86389200	Active TSS	Small Intestine	intestine
23	chr6:86386000-86389200	Active TSS	Stomach Mucosa	stomach
24	chr6:86386000-86389600	Active TSS	Psoas Muscle	Psoas
25	chr6:86386000-86390200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:86386200-86389000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:86386200-86389000	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr6:86386200-86389000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:86386200-86389000	Active TSS	Fetal Intestine Large	intestine
30	chr6:86386200-86389000	Active TSS	Fetal Stomach	stomach
31	chr6:86386200-86389200	Active TSS	Fetal Heart	heart
32	chr6:86386200-86389200	Active TSS	Thymus	Thymus
33	chr6:86386200-86389400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:86386200-86389400	Active TSS	Fetal Muscle Leg	muscle
35	chr6:86386200-86390600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:86386400-86388800	Active TSS	Primary B cells from peripheral blood	blood
37	chr6:86386400-86388800	Active TSS	Primary T cells fromperipheralblood	blood
38	chr6:86386400-86389000	Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr6:86386400-86389000	Active TSS	Duodenum Mucosa	Duodenum
40	chr6:86386400-86389000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr6:86386400-86389000	Active TSS	Placenta	Placenta
42	chr6:86386400-86389000	Active TSS	Rectal Smooth Muscle	rectum
43	chr6:86386400-86389200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:86386400-86389200	Active TSS	Fetal Lung	lung
45	chr6:86386400-86389200	Active TSS	Placenta Amnion	Placenta Amnion
46	chr6:86386400-86389400	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr6:86386400-86389600	Active TSS	Fetal Kidney	kidney
48	chr6:86386600-86388800	Active TSS	Liver	Liver
49	chr6:86386600-86388800	Active TSS	Fetal Brain Male	brain
50	chr6:86386600-86388800	Active TSS	Fetal Muscle Trunk	muscle

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