Variant report

Variant	rs2758840
Chromosome Location	chr6:86304625-86304626
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:56)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:56 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:86302744-86304659	NB4	blood:	n/a	n/a
2	HCFC1	chr6:86302839-86304634	K562	blood:	n/a	n/a
3	POLR2A	chr6:86302849-86304719	Raji	blood:	n/a	n/a
4	KAP1	chr6:86302766-86304884	HEK293	kidney:	n/a	n/a
5	POLR2A	chr6:86302933-86305372	GM12878	blood:	n/a	n/a
6	TBL1XR1	chr6:86302834-86304736	K562	blood:	n/a	n/a
7	POLR2A	chr6:86303050-86304913	PANC-1	pancreas:	n/a	n/a
8	RFX5	chr6:86303205-86304888	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr6:86302894-86304698	HCT-116	colon:	n/a	n/a
10	TBP	chr6:86302903-86304798	GM12878	blood:	n/a	n/a
11	EP300	chr6:86304279-86304627	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:86304310-86304667	SK-N-SH	brain:	n/a	n/a
13	STAT5A	chr6:86302725-86304674	GM12878	blood:	n/a	chr6:86303772-86303792 chr6:86303771-86303791 chr6:86303772-86303792
14	POLR2A	chr6:86302705-86304912	U87	brain:	n/a	n/a
15	POLR2A	chr6:86304455-86304690	HepG2	liver:	n/a	n/a
16	POLR2A	chr6:86302720-86305047	GM12891	blood:	n/a	n/a
17	POLR2A	chr6:86302928-86304829	K562	blood:	n/a	n/a
18	EP300	chr6:86304408-86304924	GM12878	blood:	n/a	n/a
19	MAX	chr6:86302899-86304786	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:86302930-86305037	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr6:86302667-86304971	PANC-1	pancreas:	n/a	n/a
22	POLR2A	chr6:86302652-86304894	SK-N-MC	brain:	n/a	n/a
23	POLR2A	chr6:86302848-86304886	MCF10A-Er-Src	breast:	n/a	n/a
24	POLR2A	chr6:86304621-86304974	ProgFib	skin:	n/a	n/a
25	MAZ	chr6:86303016-86304803	IMR90	lung:	n/a	n/a
26	NFATC1	chr6:86302908-86304638	GM12878	blood:	n/a	chr6:86303739-86303752
27	POLR2A	chr6:86302864-86304855	IMR90	lung:	n/a	n/a
28	MTA3	chr6:86302697-86304803	GM12878	blood:	n/a	n/a
29	RCOR1	chr6:86302761-86304770	GM12878	blood:	n/a	n/a
30	PML	chr6:86302588-86304681	GM12878	blood:	n/a	n/a
31	JUND	chr6:86302829-86304691	K562	blood:	n/a	n/a
32	POLR2A	chr6:86302940-86304706	GM18951	blood:	n/a	n/a
33	POLR2A	chr6:86302803-86305139	MCF-7	breast:	n/a	n/a
34	POLR2A	chr6:86303052-86305294	U87	brain:	n/a	n/a
35	IRF1	chr6:86303000-86304988	K562	blood:	n/a	chr6:86303509-86303523 chr6:86303001-86303013 chr6:86303705-86303719 chr6:86303002-86303012 chr6:86303001-86303013
36	RELA	chr6:86302866-86304626	GM18505	blood:	n/a	chr6:86304327-86304336 chr6:86304327-86304336
37	MYC	chr6:86302791-86304786	K562	blood:	n/a	n/a
38	POLR2A	chr6:86302791-86304691	MCF10A-Er-Src	breast:	n/a	n/a
39	MXI1	chr6:86302732-86304857	IMR90	lung:	n/a	n/a
40	MYC	chr6:86302656-86304753	K562	blood:	n/a	n/a
41	POLR2A	chr6:86302832-86304872	HUVEC	blood vessel:	n/a	n/a
42	POLR2A	chr6:86302958-86304772	HUVEC	blood vessel:	n/a	n/a
43	JUN	chr6:86302654-86304632	K562	blood:	n/a	n/a
44	POLR2A	chr6:86302935-86304738	Hela-S3	cervix:	n/a	n/a
45	POLR2A	chr6:86302827-86304719	K562	blood:	n/a	n/a
46	POLR2A	chr6:86302782-86305122	HepG2	liver:	n/a	n/a
47	POLR2A	chr6:86302839-86304644	GM18505	blood:	n/a	n/a
48	POLR2A	chr6:86303007-86305178	U87	brain:	n/a	n/a
49	MXI1	chr6:86301986-86304867	SK-N-SH	brain:	n/a	n/a
50	POLR2A	chr6:86302789-86305511	PFSK-1	brain:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:86299824..86305374-chr6:86350530..86356322,11	MCF-7	breast:
2	chr6:86301331..86304881-chr6:86350851..86355985,12	MCF-7	breast:
3	chr6:86304019..86306829-chr6:86313728..86315892,3	MCF-7	breast:
4	chr6:86298683..86300956-chr6:86302311..86304856,2	MCF-7	breast:
5	chr6:86289336..86292710-chr6:86302948..86306481,4	MCF-7	breast:
6	chr6:86300286..86310605-chr6:86384413..86390498,39	K562	blood:
7	chr6:86300457..86307827-chr6:86347697..86356337,20	K562	blood:
8	chr6:86301325..86305014-chr6:86385299..86388840,4	MCF-7	breast:
9	chr6:86302271..86307129-chr6:86385631..86390073,11	MCF-7	breast:
10	chr6:86300873..86305245-chr6:86347697..86356641,19	K562	blood:
11	chr6:86298349..86307534-chr6:86383938..86391964,31	K562	blood:

No data

Variant related genes	Relation type
SNX14	TF binding region
ENSG00000135317	Chromatin interaction
ENSG00000203875	Chromatin interaction
ENSG00000135316	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1059306	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10944133	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10944137	1.00[ASW][hapmap];0.82[CEU][hapmap];0.84[MEX][hapmap];0.82[MKK][hapmap];0.83[TSI][hapmap]
rs1173415	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1173417	0.83[CEU][hapmap]
rs11755642	0.82[CEU][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs12192546	0.82[CEU][hapmap];0.84[MEX][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap]
rs12193904	0.81[CEU][hapmap]
rs12199873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12203963	0.83[CEU][hapmap]
rs12205013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12212480	1.00[ASW][hapmap];0.81[CEU][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs12212560	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs13207173	0.82[CEU][hapmap]
rs1335442	0.82[CEU][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap]
rs1885607	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2065114	0.91[CHB][hapmap]
rs2225754	0.82[CEU][hapmap]
rs2229523	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2475790	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2475791	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2475792	0.86[CEU][hapmap]
rs2484355	0.86[EUR][1000 genomes]
rs2758842	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs2758843	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs2758844	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2758845	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2758846	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2758847	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2758848	0.83[CEU][hapmap]
rs2783171	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2842600	0.83[CEU][hapmap]
rs2842601	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2842602	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2842603	0.86[CEU][hapmap]
rs2842604	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2842607	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2842608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2842609	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2842611	0.83[CEU][hapmap]
rs2842612	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2842613	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2842614	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs2842617	0.87[EUR][1000 genomes]
rs3087978	0.82[CEU][hapmap]
rs3812133	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4145082	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4235826	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4235827	0.87[ASN][1000 genomes]
rs4304137	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4348284	0.83[CEU][hapmap]
rs4351223	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4383777	0.82[EUR][1000 genomes]
rs4419647	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4431401	0.83[CEU][hapmap]
rs4441928	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4501401	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4579322	0.89[CHB][hapmap]
rs4706240	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4707207	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.84[MEX][hapmap];0.97[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4707209	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4707211	0.83[CEU][hapmap]
rs4707217	0.84[EUR][1000 genomes]
rs6454469	0.81[ASN][1000 genomes]
rs6454471	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6454486	0.82[EUR][1000 genomes]
rs6454487	0.82[CEU][hapmap];0.83[TSI][hapmap]
rs6909767	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs6922	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6926049	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6928448	1.00[ASW][hapmap]
rs6935918	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7452605	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7742201	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7742691	0.91[CEU][hapmap]
rs7746065	0.91[CHB][hapmap]
rs7757864	0.80[EUR][1000 genomes]
rs7768065	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7770359	0.82[ASN][1000 genomes]
rs7771612	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs7775864	0.85[EUR][1000 genomes]
rs911927	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs9294337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9342041	0.86[EUR][1000 genomes]
rs9344532	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9344533	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs9344542	0.87[CEU][hapmap]
rs9351065	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9353318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9353320	0.84[EUR][1000 genomes]
rs9353327	0.87[CEU][hapmap]
rs9359658	0.84[EUR][1000 genomes]
rs9362230	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9362233	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9362239	0.83[EUR][1000 genomes]
rs9444349	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9444352	0.83[CEU][hapmap]
rs9450284	0.82[CEU][hapmap]
rs9450285	0.83[CEU][hapmap]
rs9450290	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9450302	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs9450318	0.83[EUR][1000 genomes]
rs9450319	0.82[EUR][1000 genomes]
rs9647601	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv886334	chr6:86214507-86394403	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
4	esv1792638	chr6:86224053-86336300	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3351743	chr6:86286282-86308720	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv5383	chr6:86303223-86348023	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs2758840	SNHG5	cis	Muscle Skeletal	GTEx
rs2758840	SNHG5	cis	Nerve Tibial	GTEx
rs2758840	SNHG5	cis	lung	GTEx
rs2758840	SNHG5	cis	Esophagus Mucosa	GTEx
rs2758840	SNHG5	cis	Thyroid	GTEx
rs2758840	SNHG5	cis	Artery Tibial	GTEx
rs2758840	SNHG5	Cis_1M	lymphoblastoid	RTeQTL
rs2758840	SNHG5	cis	Skin Sun Exposed Lower leg	GTEx
rs2758840	SNHG5	cis	multi-tissue	Pritchard
rs2758840	SNHG5	cis	Esophagus Muscularis	GTEx
rs2758840	SNHG5	cis	Whole Blood	GTEx
rs2758840	SNHG5	cis	Adipose Subcutaneous	GTEx
rs2758840	NT5E	cis	cerebellum	SCAN
rs2758840	SNHG5	cis	Heart Left Ventricle	GTEx

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86301800-86304800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:86301800-86305000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:86302000-86304800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:86302000-86304800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:86302000-86304800	Active TSS	HSMMtube	muscle
6	chr6:86302000-86306200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:86302200-86304800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:86302200-86304800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:86302200-86304800	Active TSS	Brain Anterior Caudate	brain
10	chr6:86302200-86304800	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr6:86302200-86304800	Active TSS	Rectal Smooth Muscle	rectum
12	chr6:86302200-86304800	Active TSS	HSMM	muscle
13	chr6:86302200-86304800	Active TSS	Osteobl	bone
14	chr6:86302200-86305000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:86302200-86305000	Active TSS	Rectal Mucosa Donor 31	rectum
16	chr6:86302200-86305000	Active TSS	HMEC	breast
17	chr6:86302200-86305600	Active TSS	K562	blood
18	chr6:86302400-86304800	Active TSS	Muscle Satellite Cultured Cells	--
19	chr6:86302400-86304800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:86302400-86304800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:86302400-86304800	Active TSS	Fetal Intestine Small	intestine
22	chr6:86302400-86305200	Active TSS	GM12878-XiMat	blood
23	chr6:86302600-86304800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:86302600-86304800	Active TSS	Fetal Intestine Large	intestine
25	chr6:86302600-86305000	Active TSS	H1 Cell Line	embryonic stem cell
26	chr6:86302600-86305000	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr6:86302800-86304800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr6:86303000-86304800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr6:86304000-86304800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:86304000-86304800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:86304000-86305000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr6:86304200-86304800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr6:86304200-86304800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:86304200-86304800	Flanking Active TSS	HUVEC	blood vessel
35	chr6:86304200-86305000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr6:86304400-86304800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
37	chr6:86304400-86304800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:86304400-86304800	Flanking Active TSS	Liver	Liver
39	chr6:86304400-86304800	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr6:86304400-86304800	Flanking Active TSS	Hela-S3	cervix
41	chr6:86304400-86304800	Flanking Active TSS	NHEK	skin
42	chr6:86304400-86305000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:86304400-86305000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:86304400-86305000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:86304400-86305600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:86304400-86309200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:86304400-86319600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr6:86304400-86321000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:86304400-86321200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:86304400-86324200	Weak transcription	Ovary	ovary

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