Variant report

Variant	rs6928448
Chromosome Location	chr6:86289415-86289416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:86286722..86289673-chr6:86387180..86389276,2	MCF-7	breast:
2	chr6:86287818..86291892-chr6:86385672..86390313,6	MCF-7	breast:
3	chr6:86281475..86283897-chr6:86288113..86290341,2	K562	blood:
4	chr6:86288405..86291520-chr6:86301409..86305260,4	K562	blood:
5	chr6:86286697..86290056-chr6:86301886..86305465,5	MCF-7	breast:
6	chr6:86289336..86292710-chr6:86302948..86306481,4	MCF-7	breast:
7	chr6:86287653..86290758-chr6:86386971..86389926,3	K562	blood:
8	chr6:86288404..86291892-chr6:86352318..86354794,4	MCF-7	breast:
9	chr6:86285488..86287926-chr6:86288888..86290773,2	MCF-7	breast:
10	chr6:86279748..86283159-chr6:86286791..86290808,4	K562	blood:
11	chr6:86288385..86291520-chr6:86301409..86305260,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135317	Chromatin interaction
ENSG00000203875	Chromatin interaction
ENSG00000135316	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10944137	1.00[ASW][hapmap]
rs12212480	1.00[ASW][hapmap]
rs2758840	1.00[ASW][hapmap]
rs2758847	1.00[ASW][hapmap]
rs2783171	1.00[ASW][hapmap]
rs2842604	1.00[ASW][hapmap]
rs2842607	1.00[ASW][hapmap]
rs2842612	1.00[ASW][hapmap]
rs2842613	1.00[ASW][hapmap]
rs3812133	1.00[ASW][hapmap]
rs4235825	1.00[CEU][hapmap]
rs4351223	1.00[ASW][hapmap]
rs6921710	1.00[CEU][hapmap]
rs6922	1.00[ASW][hapmap]
rs7452605	1.00[ASW][hapmap]
rs9344532	1.00[ASW][hapmap]
rs9351065	1.00[ASW][hapmap]
rs9362230	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	esv3326486	chr6:86020165-86292456	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv886333	chr6:86199243-86289415	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv886334	chr6:86214507-86394403	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
6	esv1792638	chr6:86224053-86336300	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv3351743	chr6:86286282-86308720	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86224200-86302600	Weak transcription	Colonic Mucosa	Colon
2	chr6:86243400-86301400	Weak transcription	Thymus	Thymus
3	chr6:86252800-86289600	Weak transcription	Esophagus	oesophagus
4	chr6:86263000-86289600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:86265600-86289800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:86266400-86290000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:86272000-86290200	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:86278200-86302600	Weak transcription	Ovary	ovary
9	chr6:86278400-86291400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:86280000-86301400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:86280200-86290200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:86281200-86289600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:86281400-86301600	Weak transcription	Fetal Thymus	thymus
14	chr6:86281600-86290000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:86281600-86290000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:86281600-86290200	Weak transcription	GM12878-XiMat	blood
17	chr6:86281600-86291800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:86281800-86290400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:86282200-86290400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:86282200-86291600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:86282400-86290200	Weak transcription	Placenta	Placenta
22	chr6:86283000-86290200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:86283600-86290200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:86284400-86292000	Enhancers	Stomach Mucosa	stomach
25	chr6:86285000-86290400	Weak transcription	Small Intestine	intestine
26	chr6:86285200-86290200	Weak transcription	Aorta	Aorta
27	chr6:86285400-86290400	Weak transcription	Hela-S3	cervix
28	chr6:86285600-86289600	Weak transcription	NH-A	brain
29	chr6:86285600-86290000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:86285600-86290200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:86285600-86290200	Weak transcription	HSMM	muscle
32	chr6:86285600-86290600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:86285600-86290800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:86285800-86289600	Weak transcription	HMEC	breast
35	chr6:86286000-86291200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr6:86286200-86289600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:86286400-86289800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:86286400-86290200	Weak transcription	Osteobl	bone
39	chr6:86286400-86290400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:86286400-86291200	Weak transcription	Brain Germinal Matrix	brain
41	chr6:86286600-86289600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:86286600-86289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:86286600-86290400	Weak transcription	HUVEC	blood vessel
44	chr6:86286600-86291400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:86286600-86291600	Weak transcription	Brain Anterior Caudate	brain
46	chr6:86286600-86291600	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:86286600-86302000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:86286800-86289600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:86286800-86289800	Weak transcription	NHDF-Ad	bronchial
50	chr6:86286800-86290800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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