Variant report

Variant	rs4235825
Chromosome Location	chr6:86167043-86167044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:86159096..86161442-chr6:86164229..86167917,3	MCF-7	breast:
2	chr6:86163446..86165204-chr6:86166523..86168514,2	K562	blood:
3	chr6:86165562..86167766-chr6:86176895..86178725,2	MCF-7	breast:
4	chr6:86166423..86168095-chr6:86199386..86201242,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135318	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs313192	0.81[AMR][1000 genomes]
rs4707204	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4707205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6921710	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6928448	1.00[CEU][hapmap]
rs7747248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	esv3326486	chr6:86020165-86292456	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3435075	chr6:86052235-86271910	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv463937	chr6:86114766-86264374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv604092	chr6:86114766-86264374	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv520112	chr6:86144875-86247759	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86160600-86168000	Weak transcription	Lung	lung
2	chr6:86160600-86171400	Weak transcription	Gastric	stomach
3	chr6:86160800-86168000	Weak transcription	Esophagus	oesophagus
4	chr6:86161200-86168600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:86161800-86167600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:86161800-86170400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:86162800-86172600	Enhancers	Liver	Liver
8	chr6:86163000-86167600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:86163000-86167800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:86163200-86176600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:86163400-86167800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:86163400-86168200	Weak transcription	Fetal Stomach	stomach
13	chr6:86163400-86170600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:86163600-86167400	Weak transcription	NH-A	brain
15	chr6:86163600-86167800	Weak transcription	A549	lung
16	chr6:86163600-86168000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:86163600-86168200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:86163600-86170400	Weak transcription	Spleen	Spleen
19	chr6:86163600-86171200	Weak transcription	Placenta	Placenta
20	chr6:86163800-86167200	Genic enhancers	HMEC	breast
21	chr6:86163800-86167600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:86164000-86168000	Weak transcription	Aorta	Aorta
23	chr6:86164000-86168000	Weak transcription	Fetal Thymus	thymus
24	chr6:86164000-86169800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:86164000-86171200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:86164200-86167400	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:86164200-86167600	Genic enhancers	Osteobl	bone
28	chr6:86164400-86167600	Weak transcription	Primary B cells from cord blood	blood
29	chr6:86164600-86167200	Genic enhancers	NHEK	skin
30	chr6:86164600-86168200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:86164800-86167200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:86164800-86168000	Weak transcription	Pancreas	Pancrea
33	chr6:86165000-86167800	Genic enhancers	HSMM	muscle
34	chr6:86165000-86168400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:86165000-86170400	Enhancers	GM12878-XiMat	blood
36	chr6:86165200-86167400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:86165400-86167800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:86165800-86167600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:86166000-86169000	Enhancers	Fetal Muscle Leg	muscle
40	chr6:86166000-86169000	Enhancers	Ovary	ovary
41	chr6:86166000-86171200	Enhancers	Primary T cells from cord blood	blood
42	chr6:86166200-86173800	Enhancers	Hela-S3	cervix
43	chr6:86166400-86169000	Enhancers	Primary B cells from peripheral blood	blood
44	chr6:86166400-86169200	Weak transcription	HepG2	liver
45	chr6:86166600-86168000	Genic enhancers	Muscle Satellite Cultured Cells	--
46	chr6:86166600-86174800	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr6:86166800-86167600	Weak transcription	Brain Anterior Caudate	brain
48	chr6:86166800-86168000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr6:86166800-86168600	Enhancers	HUVEC	blood vessel
50	chr6:86166800-86172600	Enhancers	Stomach Smooth Muscle	stomach

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