Variant report

Variant	rs3091313
Chromosome Location	chr3:46187939-46187940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3136670	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs7635373	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:46184600-46194800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:46186000-46188400	Weak transcription	Spleen	Spleen
4	chr3:46186000-46188600	Weak transcription	Lung	lung
5	chr3:46186800-46188800	Enhancers	Fetal Thymus	thymus
6	chr3:46187000-46188200	Enhancers	Dnd41	blood
7	chr3:46187200-46195200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:46187400-46188000	Weak transcription	Primary T cells from cord blood	blood
9	chr3:46187400-46188600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:46187400-46188800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:46187400-46188800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:46187600-46188800	Enhancers	Primary B cells from peripheral blood	blood
13	chr3:46187600-46188800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:46187600-46189000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr3:46187800-46188200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:46187800-46188600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links