Variant report

Variant	rs7635373
Chromosome Location	chr3:46336293-46336294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1800944	0.87[AFR][1000 genomes]
rs3091313	1.00[AMR][1000 genomes]
rs3092956	0.83[AFR][1000 genomes]
rs3136670	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46324600-46336600	Weak transcription	Gastric	stomach
2	chr3:46327200-46337800	Weak transcription	Dnd41	blood
3	chr3:46329200-46338600	Weak transcription	Thymus	Thymus
4	chr3:46332800-46336600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:46333400-46336800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:46333800-46336400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:46333800-46336800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:46334200-46336400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:46334200-46336600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr3:46334200-46336800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:46334200-46336800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:46334600-46336600	Enhancers	Primary B cells from cord blood	blood
13	chr3:46334800-46336400	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:46334800-46336800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr3:46334800-46336800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:46334800-46339200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:46335000-46345400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr3:46335400-46336400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:46335400-46336400	Enhancers	Duodenum Mucosa	Duodenum
20	chr3:46335400-46342800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:46335600-46338600	Weak transcription	Primary T cells from cord blood	blood
22	chr3:46335600-46338600	Weak transcription	Spleen	Spleen
23	chr3:46336000-46337400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr3:46336200-46337600	Weak transcription	Fetal Thymus	thymus
25	chr3:46336200-46337800	Enhancers	GM12878-XiMat	blood
26	chr3:46336200-46339000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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