Variant report

Variant	rs3136670
Chromosome Location	chr3:46243361-46243362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3091313	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs7635373	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3136670	LZTFL1	cis	lymphoblastoid	seeQTL
rs3136670	MSRA	trans	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46235400-46247600	Weak transcription	Placenta	Placenta
2	chr3:46235400-46249600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:46239600-46243800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:46239800-46249400	Weak transcription	Primary T cells from cord blood	blood
5	chr3:46241000-46244600	Weak transcription	Spleen	Spleen
6	chr3:46241200-46246600	Genic enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:46241600-46247400	Weak transcription	Brain Substantia Nigra	brain
8	chr3:46242400-46246800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:46242800-46247400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
10	chr3:46243000-46244600	Weak transcription	Fetal Lung	lung
11	chr3:46243000-46249000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:46243200-46244200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:46243200-46244400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:46243200-46244600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:46243200-46244600	Weak transcription	Lung	lung
16	chr3:46243200-46246200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:46243200-46246600	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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